Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2730 |
Symbol | dapF |
ID | 4082469 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 2876673 |
End bp | 2877479 |
Gene Length | 807 bp |
Protein Length | 268 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638011113 |
Product | diaminopimelate epimerase |
Protein accession | YP_617768 |
Protein GI | 103488207 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0253] Diaminopimelate epimerase |
TIGRFAM ID | [TIGR00652] diaminopimelate epimerase |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0948067 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGATC GCTTCACCAA GATGCATGGG CTTGGCAACG ACTTCGTCGT GATCGACGCG CGCGTGGCGC CGGTCGAGAT GACGCCGGCG CGCGCGCATG CGATCGCCGA CCGGCGCCAC GGCATCGGGT GCGATCAGCT GATCCTGCTC GAACCCTCGA CCAGCGCGGA CGTGAAGATG CGCATCTTCA ACGCCGATGG GGGCGAGGTC GAGGCGTGCG GCAATGCGAC GCGCTGTGTC GCGACGCTGA TCGGCAAGCC CGCGGTGATC GAGACGCTGG CGGGGATGCT GCGCGTCACC CCCGCCGACG GCGGCGCCGA GGTCACGCTG GGTGAACCCG TCTTCGACTG GGACCATATC CCGCTCGCGA TGCCGATGGA CACGCGCGAC ATGCCTGTCG CGTGGGACGA GCTGGAACAT GGCGCCGCGG TCAATGTCGG TAATCCGCAC ATCGTCTTTT TCGTGCCGGA AGCCGATGCG GTTGCGCTCG ATCAACTGGG TCCGCGGATC GAGACCGACC CGCTGTTCCC CGAGCGCGTC AATGTCAACG TCGCGAGCCT CGACGGCGAG AATCAGCTGC AATTGCGCGT CTGGGAACGC GGTGTGGGGC TCACGCAGGC GTGCGGCACC GGCGCCTGCG CCACTGCGGT CGCCGCGATC CGTGCCGGAC TGGTGCGGTC GCCGGTGACC GTCGCGCTGC CCGGCGGTGA TCTGGTCATC CGCTGGGCAC CCGGCGAACC CATCGTGATG AGCGGCGCCG CGACACGCGT GTTCGACGGC GAAACCGACT GGGCACAGTT CGGATGA
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Protein sequence | MADRFTKMHG LGNDFVVIDA RVAPVEMTPA RAHAIADRRH GIGCDQLILL EPSTSADVKM RIFNADGGEV EACGNATRCV ATLIGKPAVI ETLAGMLRVT PADGGAEVTL GEPVFDWDHI PLAMPMDTRD MPVAWDELEH GAAVNVGNPH IVFFVPEADA VALDQLGPRI ETDPLFPERV NVNVASLDGE NQLQLRVWER GVGLTQACGT GACATAVAAI RAGLVRSPVT VALPGGDLVI RWAPGEPIVM SGAATRVFDG ETDWAQFG
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