| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2729 |
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| Symbol | |
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| ID | 4082468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 2874989 |
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| End bp | 2876620 |
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| Gene Length | 1632 bp |
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| Protein Length | 543 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638011112 |
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| Product | diguanylate cyclase/phosphodiesterase |
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| Protein accession | YP_617767 |
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| Protein GI | 103488206 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 0.544436 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTATTCGA CGCCAAAGTC ACTGGACCGC AGCGAGGGCG CCAGACGCGA CATCATCACC
GGAGGCATCG TCGTTGCCGC GACCTTGCTG TTCATCGGCA CGGGCGGCAA TGTCATGCAG
GCGGTCGTTC GCGCGCTGAT CGGGATCGGC GGCGGACCCG ACCGGGTGCT GGCGACCGCG
CTGGTGCTCA ACATCGCGCT GATCCTCTTC GGCTGGCGCC GCTACAATGA TCTCAACCGC
GAAATCCGCG AGCGCACCGA GGCCGAGCAG CGCGCACGAT ATCTTGCCGA CACCGACCCG
CTCACCGGCT TTCTCAACCG CCGCGCGCTG CTGGTGAAGG GCCAGCGGAT GATTGCCGAA
GCCGTGGCCG AAAAGCGCGA GGTCGCGCTG TTCCTGCTCG ACCTCGACCA TTTCAAGACG
GTGAACGACA TCCACGGTCA TGCCGCGGGC GACCGCGTGC TGCAGGTCGC GGCCGAACGC
ATCGCCGCCG TGCTTCCGCC GAACGCCACC AAGGCGCGGC TCGGCGGCGA CGAGTTCGTC
GCGATGATGG CATTCGACCC TTCGGCGCGC GGCGACATCG ACGCGCTGGC GGCAGAACTG
GTCACCGCGC TGGACAACCG GATCATGCAC GACGCGCAGC AGATCCGCAT CGGCGCCTCG
CTCGGCATCG CGCTGGCAAG CGACGGCGGC GTCTCGATGG ACACGATGGT TCGTCAGGCC
GACATCGCCA TGTATCATGG CAAGGACGAA GGGCGGAACC GCCATGTCTG GTTCGAACAG
GGCATGGAAA TGGCGGTGCA GGTGCGCAAC CAGATCGAAA CGGGCATTCG CGAAGGCATG
CCGCGCGGCG AGTTCGTGCC ACACTTCGAG CCGCAGGTTG ACATCGCGTC GGGCCGCCTC
GTCGGATTTG AAATGCTGAT GCGCTGGGAA TCGCCCGAAC ATGGCCTGAT TCCGCCCGAA
CGCTTCATTC CGGTTGCCGA GGCAAGCGGG CTGATCGGGG AATTGTCGCT GCGCGTGATC
CGCGACGCGA TGGACATCGC AAAACGCTGG GATCCGTCGA TCATCCTCGC CGTCAATATC
TCACCGCAGC AGTTGAAAGA CCCCTGGTTC AGCCAGAAGC TCACCAAGCT GCTCGTCGAA
ACGGGTTTCC CCGCGGCGCA GCTCGAGGTC GAGATCACCG AAAGCTCGCT GTTCGAAAAT
CTGCCGCTCG TCCGCTCGAT CGTCACCAGC CTCAAGAATC AGGGGGTGTC GCTGAGCCTC
GACGATTTCG GGACTGGCTA CAGTTCGCTG TCGCATCTCC GCGCGCTGCC CTTCGACCGG
ATCAAGATCG ACCGCAGTTT CGTCACCGCA ATGCGCGGCA GCCCCGACGC GCAGGCGATC
GTCCTCGCGA TCGTCCGGCT GGGCGAAAGC CTGGCGATGC CGATCACCGC CGAGGGCGTC
GAGGATGAGG CGACCGCGAT CGAATTGACG CGGCTCGGCT GCGCGAAAGG GCAGGGCTGG
CATTTCGGCC GCGCCGCATC GGCCGCCGAC ACCGAGCGCC TGCTCGCCGA CCGCGGGCTG
CTGCGCGATC CAGTGGGGGC GGCGCCGACG CAGGGCGCCG ACGCGGAAGG GTTGCTGCGC
AAGACCGCTT GA
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| Protein sequence | MYSTPKSLDR SEGARRDIIT GGIVVAATLL FIGTGGNVMQ AVVRALIGIG GGPDRVLATA
LVLNIALILF GWRRYNDLNR EIRERTEAEQ RARYLADTDP LTGFLNRRAL LVKGQRMIAE
AVAEKREVAL FLLDLDHFKT VNDIHGHAAG DRVLQVAAER IAAVLPPNAT KARLGGDEFV
AMMAFDPSAR GDIDALAAEL VTALDNRIMH DAQQIRIGAS LGIALASDGG VSMDTMVRQA
DIAMYHGKDE GRNRHVWFEQ GMEMAVQVRN QIETGIREGM PRGEFVPHFE PQVDIASGRL
VGFEMLMRWE SPEHGLIPPE RFIPVAEASG LIGELSLRVI RDAMDIAKRW DPSIILAVNI
SPQQLKDPWF SQKLTKLLVE TGFPAAQLEV EITESSLFEN LPLVRSIVTS LKNQGVSLSL
DDFGTGYSSL SHLRALPFDR IKIDRSFVTA MRGSPDAQAI VLAIVRLGES LAMPITAEGV
EDEATAIELT RLGCAKGQGW HFGRAASAAD TERLLADRGL LRDPVGAAPT QGADAEGLLR
KTA
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