Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2505 |
Symbol | |
ID | 4081616 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 2640552 |
End bp | 2642795 |
Gene Length | 2244 bp |
Protein Length | 747 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638010883 |
Product | TonB-dependent receptor |
Protein accession | YP_617545 |
Protein GI | 103487984 |
COG category | [P] Inorganic ion transport and metabolism |
COG ID | [COG1629] Outer membrane receptor proteins, mostly Fe transport |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00363103 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGGACGCA AGGCGCAGCT TCTTTTCGGT ACGGCCGCGC TCTGGGTGGC GGCGGCCGCG CCCGCTTCCG CCCAAGATCG GGCTCCCGAG GCTCTTCCGG CCGATACGGC GGCGGAAGCG GGCGATGACG GCGCGATCGT CGTCACCGCG CGGCGCCGCG AGGAACGCCT GTCCGATGTG CCGACCGCGG CATCGGTGAT CGACGCGACG GCGCTCAACG ATCGCGGCGG GGCGACGGGA AGCGGCGAAC TCCTCGCCGA CCAGCCGAGC GTGCGCTTCA ACAATCTCAG CTCGTCGATC ACGTCCGAAA TTTCGATCCG CGCGTCGTCG ACGGCGCGCG CGACCAACGG TGACCCGAGC GTCGGCCTCT ATCGCAACGG CGCCTATATC GCGGGCGGTC CGGTCGGCGG GCGCAACTTC ACGCGCCTCG ATATGCTCGA CATCGGCCGC GTCGAGGTGC TGCGCGGGAC GCAGGGTGCG CTCTACGGCC GCAACGCGGT CGGCGGCGCG ATCAACATCA TATCGGCCGA GCCCGAATTC GACCTGTCGG GTTGGGCCAG CGTGCGATAC GGGTTCGAGA ACAACAGCCT GCAATTGCAG GGCGCGGTGA ATATGCCGCT GGGCGACGGG ATCGCGGCGC GGATCAGCGG CGATCTGGTC GAACAGGACA AGGGCTTTTT CTACAACCCC GACAACGACG TCTATTTCGA CCGGCAGAAG GGGCATGGCC TGCGCGGGCA GATCCGCCTG AAGCGCGGAC CGGTCGACGC GGTGATCATG GCCGAGACGC AGCGGCTGAC GACGCCGTCG ATCCATTATC AGATCTTCAT TCCGGCCGGC ACGCCGGGCT TTCCGGGCGG CTATATCCAG GACCGTTTCC GTTATCCGTG GAGCACCGCG CCGCGGGCGT CGCAGGACGT CGACGGGTTG CAGGCGATCG TGCGTGTCGA TCTTGGCGGA GCCGACCTCA CCTCGACGAC CTCCTTCCGC AAGCGACACA GCGAATATGA TCTCGACAAT GATGCGGTCA GCCCCGCCGA ACTGGCGCGT GCGCGCGCCG CGGGCGAAGT CGGGCCGCTG ACCCCGCTCG ACCCGGGCAG CGCGTCCTAT GTGGTCGATA CGACCGACAA TTTCTCGCAG GATATCCATG TCAGCGGATC GAACGACCGG CTGACCTGGC TGGTGGGGGC GGAAATGCTC CTCCTCGACA GCGATTTTTC GGTGACGACG ACGCGCACGC CGACGCTCGC CAACCCGTCG CCGGGCAATA TCGCGCCCGC GCGGCTCCAT TTCGAAAGCT ATGCCGCCTA TGGTTCGCTC GGCTTCGACC TGACCGACAG CCTCAATATC ACCGGCGAAT TGCGCTATAC GCACGACAGC CGCAGCATCA GCGCGCGGCT CTATGATCTC GGCACCGGGC TCCCGACCGG CGGGCCCTCG CGGATCATCG ACGACAGCAT CACCGCCGAC AATCTCTCCT ACAATGCGAC GCTGTCGTAC AAGCTGGCAC CCGACATCCT CGCTTATGCC AAGGTCGGGA GCAGCTATCG CGCTGGCGGC TTCAACACGC GCTTGTCCGA CCCGCGCGCG CCGAGCCCGG TGCAGGTGTT GTTCGGCAAC GAAAACAGCA CCAGCTACGA GGTCGGTTTC AAGGGTAGCC CGATGCGGCG CGGCTATTTT GCGGTCGCGG GCTATTATAC CCAGCTCGAC GATCTGATCG CGCAGGTCGA CGACGGCTGC GCGCTGACCA ACCCCACCTG CCCGGTCGCG GCGGTGAGCT ATCTCACCAA CGCGGGCGAT GCGAAGAGCT GGGGCGTCGA AGCCGAATAC AGCCAGGGCT TCGACCTTGG CCAAGGCAGC GGGCGTCTGG CGCTGAGCGG GTCGCGGCAG GGCGGCAAGG TGAAGAGCGG GCGTTACGAC GGGCTCGACC TCGCGCAGGT GCCCGACTGG CTCGCTTCGG CGAACCTCAA CCTGCGCGCC CCGGTCGCGA AAAATGTTTC GCTGACCGGC AACATCCTGG TCAGCGGCCA ATGGGGCGGG AAGCAGGAAC TGACCGCGAC CTCGGTCGAC CTCGACGACT ATGTGCTCGT CAACCTGCGC GTCGGGGTCG AGTTCGGGAA GGTGAGCATC AGCGCCTTCG CGAACAACCT CTTCGACAAG GTCTACTATG TCGCGCAGGC GCCGACGATC AACCGCTACA GCCAGCCGCG AGTGATCGGG GTCGAAGGAC GTATCTCCTT CTGA
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Protein sequence | MGRKAQLLFG TAALWVAAAA PASAQDRAPE ALPADTAAEA GDDGAIVVTA RRREERLSDV PTAASVIDAT ALNDRGGATG SGELLADQPS VRFNNLSSSI TSEISIRASS TARATNGDPS VGLYRNGAYI AGGPVGGRNF TRLDMLDIGR VEVLRGTQGA LYGRNAVGGA INIISAEPEF DLSGWASVRY GFENNSLQLQ GAVNMPLGDG IAARISGDLV EQDKGFFYNP DNDVYFDRQK GHGLRGQIRL KRGPVDAVIM AETQRLTTPS IHYQIFIPAG TPGFPGGYIQ DRFRYPWSTA PRASQDVDGL QAIVRVDLGG ADLTSTTSFR KRHSEYDLDN DAVSPAELAR ARAAGEVGPL TPLDPGSASY VVDTTDNFSQ DIHVSGSNDR LTWLVGAEML LLDSDFSVTT TRTPTLANPS PGNIAPARLH FESYAAYGSL GFDLTDSLNI TGELRYTHDS RSISARLYDL GTGLPTGGPS RIIDDSITAD NLSYNATLSY KLAPDILAYA KVGSSYRAGG FNTRLSDPRA PSPVQVLFGN ENSTSYEVGF KGSPMRRGYF AVAGYYTQLD DLIAQVDDGC ALTNPTCPVA AVSYLTNAGD AKSWGVEAEY SQGFDLGQGS GRLALSGSRQ GGKVKSGRYD GLDLAQVPDW LASANLNLRA PVAKNVSLTG NILVSGQWGG KQELTATSVD LDDYVLVNLR VGVEFGKVSI SAFANNLFDK VYYVAQAPTI NRYSQPRVIG VEGRISF
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