| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2483 |
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| Symbol | |
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| ID | 4081359 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2620969 |
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| End bp | 2623413 |
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| Gene Length | 2445 bp |
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| Protein Length | 814 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010861 |
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| Product | conjugal transfer ATPase TrbE |
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| Protein accession | YP_617523 |
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| Protein GI | 103487962 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3451] Type IV secretory pathway, VirB4 components |
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| TIGRFAM ID | [TIGR00929] type IV secretion/conjugal transfer ATPase, VirB4 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.260305 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAATC TCTCCGAATA TCGCACGAAA TCCGCCCGCC TCGCTGACTT TCTCCCTTGG
GTCTGCCTGG TGGCGGAGGG CGTGGTGCTG AACAAGGATG GCTCCTTCCA GCGCACGGCG
CGCTTCCGCG GGCCCGACCT CGACAGCGCC ACGCCCGCCG AACTTGTCGC GGTCACGTCG
CGGCTCAACA ACACGCTGCG CCGGCTGGGA TCAGGCTGGG CCGTGTTCGT CGAGGCGCAG
CGGGTCCCGG CCATGACCTA TCCCGTGTCC GAGTTCCCCG ACCCGGTATC GGAACTCGTC
GATATCGAAC GCCGCGAGCA GTTCCGCGAG GAGGGGGCGC ATTTCGAGAG CTTCTATTAT
CTGACCTTGC TCTGGATGCC GCCCGCCGAG GAGGCGGCGC GCGCCGAGGC CTGGCTCTAC
GAGGGCCGTT CGAAGACGGG CGTCGATGCG CAGGAATTGC TGAAAAGCTT CGCCGATCGC
ACCGAGCGCG TGCTGCATCT TGTCGAGGGC TTCATGCCTG AGGTCGAATG GCTCGGTGAC
GGCGAGACGC TGACCTATCT GCACAGCTGC ATCTCGACCA AGGCCCAGCG CGTCCGCGTG
CCCGAAACGC CGGCCTATCT CGACGCGCTG CTCGCCGACG AGGCGCTGGT CGGCGGTCTC
GAGCCGCGGC TCGGCGACCA TCATCTGCGC ACGCTCACCA TAACCGGCTT TCCGAGCGTA
ACCTTCCCGG GGCTGCTCGA CGAACTCAAC CGCCAGGCCT TCGGCTATCG CTGGTCGTCG
CGCGCGATCA TGCTCGACAA AACCGACGCG ACCAAGCTGC TGACCAAGAT TCGCCGGCAA
TGGTTCGCCA AGCGCAAGTC CGTCGCCGCA ATCCTCAAGG AAGTGATGAC CAACGAGGCG
TCGGTCCTGA TGGACAGCGA TGCCTCGAAC AAGGCGGCCG ACGCCGACAT GGCGTTGCAG
GAGCTGGGCG CCGACGAAGC GGGTATCGCC TATGTCACAG CGACGATCAC GGTTTGGGAC
CGCGATCCGG CCTTGGCGGC CGAGAAGCTG CGGCTGGTCG AGAAGATCGT CCAGAGCCGC
GACTTCACCT GCACCGTCGA GGGCGTGAAC GCGCTCGAAG CCTGGTTCGG GAGCCTGCCG
GGCCATGTCT ATGCCAATGT CCGTCAGCCC CCGGTCTCGA CGCTCAATCT CGCCCATCTG
ATCCCGCTGT CGGCGGTGTG GGCGGGGGCG GAACGGGACG AGCATTTCGG TCAGTCCCCC
TTGCTTTACG GCAAGACCGA AGGTTCGACC CCGTTCCGCC TTTCGCTGCA TGTCGGCGAT
GTCGGTCACT GCCTCGTCGT CGGTCCGACC GGCGCCGGCA AGTCGGTGCT TCTGGCGCTG
ATGGCGATGC AGTTCCGCCG CTATGAAGGC AGCCAGATCT TCGCCTTCGA TTATGGCGGA
TCGATCCGCG CCGCGGCGCT TGGCATGGGC GGCGACTGGC AGGATCTCGG CGGCGCGCTT
CACGACGCGG GGAGCGACGG GTCGGTGGCG CTCCAGCCGC TCGCGCGGAT CGACGAACCG
GCCGAGCGCG CATGGGCCGC CGAATGGCTT GCGGCGCTGC TCACGGGCGA AGGCGTTGCG
GTCGATCCGG CGGCGAAGGA GCATCTCTGG TCGGCATTGA CTTCGCTCGC GACCGCGCCG
GTTACCGAGC GAACGCTCAC TGGACTCGCC GTCTTGCTCC AGTCGCAGGA ACTGAAGCTC
GCCCTTTCGC CATATCTCGT TGGCGGCCCA TGGGGTCGCC TGCTCGATGC CGAGGTCGAG
CATCTGGGCT CCGCGCGGGT GCAGGCGCTT GAAACCGAAG GCTTGGTCGG CGCTTCGTCG
GCGGCGACGG TCCTCTCCTA TCTGTTCCAC CGCATCGAGA GACGCCTCGA CGGCTCGCCG
ACGTTGATCA TCATCGACGA AGGCTGGCTC GTTCTCGACA GCCCCGCCTT CGCCGCGCAA
CTGCGCGAAT GGCTCAAGAC GCTCCGCAAG AAGAATGCGA GCGTGATCTT CGCGACGCAG
AGCCTCGCCG ATATCGAAGG GTCGAGCATC GCGCCCGCGA TCATCGAAAG CTGCCCGACA
CGGATATTCC TGCCGAACGA GCGCGCCGCT GAGCCGCAGA TCGCGCGGGT CTATGACCGC
TTCGGCCTGA ACAGCAGACA GGTGGAGATA TTGAGCCGGG CGACGCCGAA GCGTGACTAT
TATTGCCAGT CACGGCGCGG CAACCGACTG TTCGACCTTG GCCTCGGCGA CATCGCGCTC
GCCTTTGCCG CCGCCTCTTC GAAATCCGAC CAGATTCGCA TCGGCGAGCT GATGGCCGCG
CATGGCCAAG ACCAGTTCGC GGCGGCCTGG CTTCGCCATC GCGGCCTCGA ATGGGCCGCC
GATCTGCTCG GCAATCTTGA AATCGCAGCC CCCCTGAAGG AGTGA
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| Protein sequence | MMNLSEYRTK SARLADFLPW VCLVAEGVVL NKDGSFQRTA RFRGPDLDSA TPAELVAVTS
RLNNTLRRLG SGWAVFVEAQ RVPAMTYPVS EFPDPVSELV DIERREQFRE EGAHFESFYY
LTLLWMPPAE EAARAEAWLY EGRSKTGVDA QELLKSFADR TERVLHLVEG FMPEVEWLGD
GETLTYLHSC ISTKAQRVRV PETPAYLDAL LADEALVGGL EPRLGDHHLR TLTITGFPSV
TFPGLLDELN RQAFGYRWSS RAIMLDKTDA TKLLTKIRRQ WFAKRKSVAA ILKEVMTNEA
SVLMDSDASN KAADADMALQ ELGADEAGIA YVTATITVWD RDPALAAEKL RLVEKIVQSR
DFTCTVEGVN ALEAWFGSLP GHVYANVRQP PVSTLNLAHL IPLSAVWAGA ERDEHFGQSP
LLYGKTEGST PFRLSLHVGD VGHCLVVGPT GAGKSVLLAL MAMQFRRYEG SQIFAFDYGG
SIRAAALGMG GDWQDLGGAL HDAGSDGSVA LQPLARIDEP AERAWAAEWL AALLTGEGVA
VDPAAKEHLW SALTSLATAP VTERTLTGLA VLLQSQELKL ALSPYLVGGP WGRLLDAEVE
HLGSARVQAL ETEGLVGASS AATVLSYLFH RIERRLDGSP TLIIIDEGWL VLDSPAFAAQ
LREWLKTLRK KNASVIFATQ SLADIEGSSI APAIIESCPT RIFLPNERAA EPQIARVYDR
FGLNSRQVEI LSRATPKRDY YCQSRRGNRL FDLGLGDIAL AFAAASSKSD QIRIGELMAA
HGQDQFAAAW LRHRGLEWAA DLLGNLEIAA PLKE
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