| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2449 |
|---|
| Symbol | |
|---|
| ID | 4081326 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 2586636 |
|---|
| End bp | 2589863 |
|---|
| Gene Length | 3228 bp |
|---|
| Protein Length | 1075 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638010827 |
|---|
| Product | heavy metal efflux pump CzcA |
|---|
| Protein accession | YP_617489 |
|---|
| Protein GI | 103487928 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG3696] Putative silver efflux pump |
|---|
| TIGRFAM ID | [TIGR00914] heavy metal efflux pump (cobalt-zinc-cadmium) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 12 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGCTC GTATCGTTAC CTGGGCGGTC GAAAAGCGCT GGCTTGTCGT CCTGCTCACC
GCCATCGCCG CCATAATCGG GGCGACAGCA TTGTCGCGCC TGCCGATCGA CGCGGTTCCC
GACATCACCA ACAACCAGAT CCAGATCAAC GTCCGCGCCC CCGCGCTCTC GCCCGAACTC
GTCGAGAAGC AGGTCGCCTT CCCGATCGAG ACCGCGCTCG CGGGGATCCC CGGCCTCGAT
CACACAAGGT CGCTGAGCCG CAACGGCTTC GCGCAGGTCA CCGCGGTCTT CGACGATTCG
ACCGACATTT ATTTCGCGCG CCAGCAGGTC GGCGAACGCC TCAACGAGGC AACCGAGAAT
ATACCCGACG GGGTTCGCCC GGAGATGGGG CCGATCGCGA CGGGTCTCGG CGACGTCTAT
ATGTGGACGG TCCGCCTCGC GCACCGCAAA GACGATGCGC ACAAGGCCGG CGAGCCCGGC
CTCCAGCCTG ACGGCAGCTA TGTGACCCCC GAAGGCGAAC GGCTCGTCAC CGAGGCCGAC
AAGTCGACCT ATCTTCGCAC GACGCAGGAC TGGATCGTCA CGCCGCTCGT CCGGACGGTT
CCCGGCGTCG CGGGCGTCGA TGCGATCGGC GGCTATTCGA AGCAGTATCT GGTCGTTCCC
GACGTGCAGC GCCTCGCCGC GCTCGACCTC AGCCTCACCG AGCTCGCCGA AGCCCTCGAA
CGCAACAATA GTGCGGTCGG CGGCGGCGTC GTCGAGCGCA ATGGCGAAGG GCTCGCCGTT
CGTTCGGACG CGTTGGTCCG CGACACCGCC GAGCTGGCAC GCACCGTCGT CGCAACGCGC
GCGGGCGTTC CGATCACGCT CGACCAGGTG GCGACGGTCC GCACCGGACA GGCGGTTCGC
ATGGGTTCAG CCTCTGAAAA TGGCACCGAA GTCGTCGTCG GCACCGCGGT CATGCGCATC
GGCGAGAACA GCCGGACGGT CGCGACCGCG GTCGCAGACC GGCTGAAGGA GGTAAACGCC
TCGCTGCCGC CCGATGTCGT TATCGAGCCG GCGCTCGATC GTACCAAGCT CGTCAATTCG
ACGATCTGGA CGGTCGGCAA GAACCTGACC GAGGGTGCGC TGCTCGTCAT TGTCGTGCTT
TTCCTGCTGC TCGGCAATTT CCGCGCAGCG CTGATCGCGG CGCTCGTCAT CCCGATCACG
ATGCTGCTCA CCAGCTTCGG CATGCTGCGC GCCGGCGTCT CGGCGAACCT GATGAGCCTC
GGCGCACTCG ACTTCGGCCT CATCGTCGAT GGCGCCGTCA TCATCGTCGA GAATGCGCTG
CGGCGCATGG CCGACCTCCA GCATCGCCAC GGCCGCATCC TGACCGTCCA GGAACGTCTC
GCGACCGTTG CATCGGCCGC GCGCGAGATG GTGCGACCGT CTGTCTACGG GCAGGCGATC
ATCATCCTCG TCTATGTGCC CTTGCTCACC TTGAGCGGGG TCGAGGGCAA GACCTTCATC
CCGATGGCGC TGACCGTGAT CATCGCGCTC GCTTTCGCCT TCATCCTCTC GCTCACATTC
GTCCCCGCCG CGATCGCGAT CTGGCTTTCG AAGCGGGTCG AAGAAAAAGA GGGCCGCATC
ATGGCGTGGC TGAAGCAACG CTACGAGCCG GGTCTCGACC GCGCGATTAG CAAGCCCAAG
ATCACCCTCG GCGCGGGCAT CGGGGGGTTC GTCATCGCGA TCCTCGCCTT CTTCTCACTC
GGCCAGGTCT TCCTGCCGCA GCTCGACGAG GGAGATCTCC TGATCCAGGC GTTTCGCGTG
CCCTCGACGT CCGTCGAACA GAGCCAGGCC ATGCAAGTGC CGATCGAGCG GATGCTCGCA
AGGCAGCCCG AGGTCGCGAT CGTCTTCTCG AAGACCGGCA CGGCGGACCT CGCGTCCGAT
CCGATGCCGC CCAACGCGAC CGACAATTTC GTGATCCTCA AGCCTCGCAA AGAATGGCCC
GACCCAAGCC TCCCCAAGGC CGAACTCGTC GAGCGGCTGG AGAAGGAACT GAACAAGATC
CCGGGCAATG CCTATGAGAT CACTCAGCCG ATCCAGATGC GCTTCAACGA GCTGATTGCG
GGCGTGCGCG GTGACATTGC GATCAAGGTC TATGGCGACG ACTTCGACGC GATGAACGCG
ACCGCGCAGC AAGTCGCCGC AATCTTGCGG AAGACCGAAG GCGCGAGCGA CGTGCGCGTC
GAAGAAACCG AAGGTCTCTC GATGCTCGAC ATTCGGGCGA ACCGCGACGC GATGGCGCGG
CTCGGCGTCA GCGCGCGTGA CGTGCAGGAT GTCGTCACCG CAACGATCGG CGGCCGCGAG
GCCGGCACGA TCTTCGAAGG CGACCGGCGC TTCCCGATCG TCATCCGGCT GTCCGACGCG
CAGCGCGCTG ACCTGTCGGT GCTCGAACAG GTACAGGTCC CGGTGGCGGG CGGCGCCTTC
GTGCCGCTTG CGAGCGTCGC CGATATCCGT ATCGTCGAGG GACCGAACCA GATCAGCCGC
GAAAACGGGA AGAGGCGCGT CGTCGTCCAG GCCAACGTCC GCGGCCGCGC GATCTCCGAC
GTCGTGGCCG ACGCCAAGGC CGGCATCGCT AAGGATGTTC GCCTCCCCGC CGGCAGCTAC
CTTGAATGGG GCGGCCAGTT CGAGAATCTC GCCTCCGCAC GCGACCGGCT TCAGCTCGTC
GTCCCGGCCT GCTTCATCCT GATCCTGCTG CTGCTCTATG GCGCGCTTCG ATCGTCGCGC
GATGCGGCGA TCGTGTTCAC CGGGGTTCCG CTGGCACTGA TCGGCGGCGT GCTAGCACTG
TTCCTGCGCG GGATGGACTT CTCCATCTCG GCAGCAGTCG GGTTCATCGC GCTCTCGGGT
ATCGCGGTGC TCAACGGCCT CGTGATGGTG TCGTCGATCC AGGAACTGAT GCGCTCGGGC
ATGGCGCGGG CCGAAGCCGC AAGGCAAGGC GCGCTCATGC GCCTTCGCCC CGTCGTGATG
ACCGCGCTCG TCGCCAGCCT CGGGTTCGTG CCGATGGCGC TCGCGACCGG CGCGGGCGCC
GAAGTGCAGA AGCCGCTCGC GACGGTGGTG ATTGGGGGAC TGATCTCGGC GACCCTGCTC
ACGCTCTTCG TACTTCCGAC CCTCTATGCC CGCTATGGCA GCCGGGAAGC CGACCTGCGG
GAAGATCATT TGCAGTACGA CGACAGCCTA TCTGCGAGCA CCCCCTAA
|
|---|
| Protein sequence | MIARIVTWAV EKRWLVVLLT AIAAIIGATA LSRLPIDAVP DITNNQIQIN VRAPALSPEL
VEKQVAFPIE TALAGIPGLD HTRSLSRNGF AQVTAVFDDS TDIYFARQQV GERLNEATEN
IPDGVRPEMG PIATGLGDVY MWTVRLAHRK DDAHKAGEPG LQPDGSYVTP EGERLVTEAD
KSTYLRTTQD WIVTPLVRTV PGVAGVDAIG GYSKQYLVVP DVQRLAALDL SLTELAEALE
RNNSAVGGGV VERNGEGLAV RSDALVRDTA ELARTVVATR AGVPITLDQV ATVRTGQAVR
MGSASENGTE VVVGTAVMRI GENSRTVATA VADRLKEVNA SLPPDVVIEP ALDRTKLVNS
TIWTVGKNLT EGALLVIVVL FLLLGNFRAA LIAALVIPIT MLLTSFGMLR AGVSANLMSL
GALDFGLIVD GAVIIVENAL RRMADLQHRH GRILTVQERL ATVASAAREM VRPSVYGQAI
IILVYVPLLT LSGVEGKTFI PMALTVIIAL AFAFILSLTF VPAAIAIWLS KRVEEKEGRI
MAWLKQRYEP GLDRAISKPK ITLGAGIGGF VIAILAFFSL GQVFLPQLDE GDLLIQAFRV
PSTSVEQSQA MQVPIERMLA RQPEVAIVFS KTGTADLASD PMPPNATDNF VILKPRKEWP
DPSLPKAELV ERLEKELNKI PGNAYEITQP IQMRFNELIA GVRGDIAIKV YGDDFDAMNA
TAQQVAAILR KTEGASDVRV EETEGLSMLD IRANRDAMAR LGVSARDVQD VVTATIGGRE
AGTIFEGDRR FPIVIRLSDA QRADLSVLEQ VQVPVAGGAF VPLASVADIR IVEGPNQISR
ENGKRRVVVQ ANVRGRAISD VVADAKAGIA KDVRLPAGSY LEWGGQFENL ASARDRLQLV
VPACFILILL LLYGALRSSR DAAIVFTGVP LALIGGVLAL FLRGMDFSIS AAVGFIALSG
IAVLNGLVMV SSIQELMRSG MARAEAARQG ALMRLRPVVM TALVASLGFV PMALATGAGA
EVQKPLATVV IGGLISATLL TLFVLPTLYA RYGSREADLR EDHLQYDDSL SASTP
|
|---|
| |