| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_2189 |
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| Symbol | |
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| ID | 4080223 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 2300034 |
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| End bp | 2302223 |
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| Gene Length | 2190 bp |
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| Protein Length | 729 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638010567 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_617231 |
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| Protein GI | 103487670 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACATGC CATCGCGGAC AGCGCCGGGC GAGCAGGGGG GGCACGGCGT CGACGAAGGC
CCGCGCGGCT TTTTCGGTCG AATCGGGTCG CGCGCGACCC GGCGCCGCGG CGACGCCGCA
GCGAACCTGC AAACGCGCGA GGCGCTGCTT CTCCTCCAGA ATTACGAAGA AAGCGGGCGC
GGCTGGTTCT GGTCGACCGA CGCCGATGGT CGGCTTACCT ATATCACCGA CGTGGTGGCG
CGGACGATGG GTCGCTCGGC GGCGGCGTTG CTGGGCACGC CCTTGACGGA CCTCTTCCTG
CCCGCCGACA GCCATGGCGA GCGTCAGCGC ACCTTGCGGT TCCTGCTCAC GCGCCAGTCG
GCGTTCGACG ACCTGCCGCT GCGCGGCGCC TTCGAGGGCG GTGATCGCTG GTGGGCGATA
TCGGGGCGGC CGCAATATGA TGCGGACGGC CAGTTCACCG GCTATCGCGG CAGCGGCACC
GACATCACCG CGCAGCGCCG CTCGGCCGAG GATGCGTCGC GGCTTGCGCT CTATGATTCG
CTCACCGGCC TCGCCAACCG CTTCAACATC TCGAAAAAAC TCGACGCGAC GCTCGCCGCT
TTTGCGCAGC AGCAGCGCTC GTGCGCGATC ATGCTGCTCG ACCTCGACCG CTTCAAGCAG
GTCAACGACA CGCTCGGTCA TCCGGCCGGC GACGCGCTGC TTAAACAGGT CGCCGAACGG
CTGCTCAAGT TCGTCGGCGA CAAGGAAATG GTCAGCCGAT TGGGCGGCGA CGAGTTCCAG
ATCATCCTTC CCGACATCGA CGATCGCGGC AAGCTGGGCG ACATGGCGGC CGACATCATC
GCCAGCCTGT CGCAACCCTA TTCGGTCGAG GGCAGCCGCT GCATCATCGG CGCGTCGGTT
GGCGTCGCGA TCGCGCCGTT CGACGGGCAG AGCAGCGACG ATCTGGTCCG CAACGCCGAC
CTTGCGCTCT ATGCGGCGAA AGGCAATGGC TGCGGCCGCT TCGCCTTTTA TTCGAGCGAC
CTGCACCAGG CGGCCGAAGA CCGGCGCGCG CTGGAGGAAG ATCTGCGCGA CGCGCTGGCT
CGCGGCGAGA TTGCGCTCGC TTACCAGCCC GTCGTCAACG CCAGGTCGAA CATGGTGACC
GGGGTCGAGG CGCTGATCCG CTGGACCCAC CGCGACCGCG GGGCGATTTC GCCCGCACTG
TTCATCCCGA TCGCCGAAGA AGCCAATCTT ATCTGGCCGC TCGGCGAATG GGTGCTGAGG
AAGGCATGCG AGGATGCCGC GGGCTGGCCG GGCGAGATGC GCGTTGCGGT CAATGTCTCG
CCGATCCAGT TCGCCAATCC CGAACTGCCC AAGGTCGTCG CCAAGGCGCT GGCGGCCAGC
GGGCTGTCGC CGGACCGGCT CGAACTGGAG ATCACCGAAA GCGTGTTTCT GGGCGACACG
GCGGAAGCGA ACCGGATGTT CAAGGCGCTG AAGGGGCTGG GCGTGCGGCT GGCGCTCGAC
GATTTCGGCA CGGGCTATTC GTCGCTTGCC TATCTGCAAT CGGCGCCGTT CGACAAGATC
AAGATCGACC AGAGTTTCGT GCGCGGGGCG ACCGAACCGG GGTCGCGCAA CAGTGCGATC
ATTGCCGCGA TCGTCGCGCT GGCCGAGGCG CTCGATATGG AAACGACCGC CGAGGGCATC
GAATCGCTCG ACCAGCTCGA TCTCGTCCGC AAGCTCAACG TCAGCCATGT CCAGGGCTAT
GTCTACTCGC GACCCGTGCC TTGTGCCGAC CTGGTCGGTC ATACCGAGGC CGGCGTCTGG
ACGATCAAGC CGTCGGGTCC GGCGCGTCAG CGCAACGACC GCTTGTCGCT GTTCCGCAAG
GTTGGCGCGA TCCACGACAA TCACCGCTAC GCCGTCGTCA TCCGCAACCT GTCGGCGACC
GGGGCGTTCA TCGAGGGCAT TTTGGATGTG CCCGTCGGTA CGCGCTTCGT GATCGATTTC
GGCGAGGGAC AGCTCGTCAC CGCGACGGTG CGCCGGTCGA TGAAGCACCA GCAGGGCATC
GAGTTCGAAC AGACGATGGT CAGCGACGGC AATGGCGGGC TTTGCACGCG TCACCGCGTA
TCGCCCTATC TGATCGCCGC CGCGGCGCAG CAGACGAGCG CGCTGGCATT GCCGGCCTTT
ACGACGACGA GCGACTGGAA AGCCGCCTGA
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| Protein sequence | MDMPSRTAPG EQGGHGVDEG PRGFFGRIGS RATRRRGDAA ANLQTREALL LLQNYEESGR
GWFWSTDADG RLTYITDVVA RTMGRSAAAL LGTPLTDLFL PADSHGERQR TLRFLLTRQS
AFDDLPLRGA FEGGDRWWAI SGRPQYDADG QFTGYRGSGT DITAQRRSAE DASRLALYDS
LTGLANRFNI SKKLDATLAA FAQQQRSCAI MLLDLDRFKQ VNDTLGHPAG DALLKQVAER
LLKFVGDKEM VSRLGGDEFQ IILPDIDDRG KLGDMAADII ASLSQPYSVE GSRCIIGASV
GVAIAPFDGQ SSDDLVRNAD LALYAAKGNG CGRFAFYSSD LHQAAEDRRA LEEDLRDALA
RGEIALAYQP VVNARSNMVT GVEALIRWTH RDRGAISPAL FIPIAEEANL IWPLGEWVLR
KACEDAAGWP GEMRVAVNVS PIQFANPELP KVVAKALAAS GLSPDRLELE ITESVFLGDT
AEANRMFKAL KGLGVRLALD DFGTGYSSLA YLQSAPFDKI KIDQSFVRGA TEPGSRNSAI
IAAIVALAEA LDMETTAEGI ESLDQLDLVR KLNVSHVQGY VYSRPVPCAD LVGHTEAGVW
TIKPSGPARQ RNDRLSLFRK VGAIHDNHRY AVVIRNLSAT GAFIEGILDV PVGTRFVIDF
GEGQLVTATV RRSMKHQQGI EFEQTMVSDG NGGLCTRHRV SPYLIAAAAQ QTSALALPAF
TTTSDWKAA
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