Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_2186 |
Symbol | |
ID | 4080220 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 2296991 |
End bp | 2297785 |
Gene Length | 795 bp |
Protein Length | 264 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638010564 |
Product | two-component response regulator |
Protein accession | YP_617228 |
Protein GI | 103487667 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
Num covering plasmid clones | 25 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCTTTGG GTCAGTCGAT CGCGCCGCAT CTTCCTTATC TGCGGCGCTA TGGCCGGTCC GTTTCGGGGA ACCAGCAGAG CGGCGACGCG CTTGTGGCCC GGATGCTTGA AACGCTTGTC GCGAACCCAG ACGCTATCGA TCCCGACGCC GATCTGCGCA TCCAGCTTTA CCGGATGGTG CATGACAATT TCGGTCTGAT GGCGCAGCAG GCGCCCCCCG ACGGCGAGCG GGCGCGCGGC GACATGGCGA TCGCCGACGC GCGGCTGCGC CGCATCCCGT CGCTCGCGCG GCAGGCCTTG CTGCTTACGG CGGTCGAGGG CTTCGGCATC GAGGACGCGG GCCGGATCAT CGGCCGCGAC GCCGAAGCGG TGCGCGCGCT GATCCACGAC GCGACCGACG AGATCGAGCG CCAGACGCGC GCGCGCATCC TGATCATCGA GGATGAACCG ATCATCGCGA TGGACATCGA AATGATCGTC CGCGACCTTG GCCATGATGT CGTCGCGGTC GCGACGACCC ACGCCGAAGC GGTCGAAGAC GCGCAGAAGC ACCAGCCCGG CCTTGTGCTC GCCGACATCC AGCTTGCCGA CAATAGTTCG GGGATCGAGG CGGTGCAGGA AATCCTGTCG GACGTGAAGC TGCCCGTGAT TTTCATCACC GCCTTCCCCG AACGGCTGCT CACCGGCGAC CGGCCCGAAC CGGCCTTCCT GCTGACCAAG CCCTATCAGC CCGCGACGCT GCGCGCGGCG ATCTCGCAGG TGCTGTTCTT CGACGAAAGC ACGGTTCCGG CCTGA
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Protein sequence | MSLGQSIAPH LPYLRRYGRS VSGNQQSGDA LVARMLETLV ANPDAIDPDA DLRIQLYRMV HDNFGLMAQQ APPDGERARG DMAIADARLR RIPSLARQAL LLTAVEGFGI EDAGRIIGRD AEAVRALIHD ATDEIERQTR ARILIIEDEP IIAMDIEMIV RDLGHDVVAV ATTHAEAVED AQKHQPGLVL ADIQLADNSS GIEAVQEILS DVKLPVIFIT AFPERLLTGD RPEPAFLLTK PYQPATLRAA ISQVLFFDES TVPA
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