| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1938 |
|---|
| Symbol | |
|---|
| ID | 4082887 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 2042976 |
|---|
| End bp | 2044151 |
|---|
| Gene Length | 1176 bp |
|---|
| Protein Length | 391 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638010315 |
|---|
| Product | diguanylate cyclase |
|---|
| Protein accession | YP_616983 |
|---|
| Protein GI | 103487422 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 30 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCGTCG CCTTTGTCCT TGCCATCAAC ATGTCCGTCG CCGGCCTGAT CGCCGCCGCG
TTCGCCGTGG TCGCGGTGAC CAACCGGACC GCGCGGGGCG CGTGGTGGCT GGCGGCCGGA
TGCGGGCTGG GTATTGTCAA TGTCGGTCTG GAGTTCCTGC TGACGCGGCA AGTCGATCCG
ACCCCCACGG GCATCAGCAT CTTCCTCGTC TTCCTGCTGG CGCAGAGTTT CGCGCTGATC
GGTGTTGCCT CGCATTACCG GGTCGCGCCG CCGTGGATCG CAATCGCCGC AATCTGGGTG
CTGACGATCC TGGCCGTGCC GGTGATTTTC AGCCTGCCGT ACGGATCGTC GCCACGGCTG
ACGCTGTATC AGATGCCCTA TTTTGCGATG CAGTCGCTGT TTGCCATCGT CATCGTGCGA
TCGGGGCGGC GGCAGGCGCT CGACCTGTTG CTGATCGCGC TACAGATCGT TGCGGCGCTT
ATCTATCTGG CGAAACCGCT GATCGCGGCG GTTGTCGGCA CCGCGAGTTC GCCGCAGGGC
TATATGGCGT CGACCTATGC CGCGATTTCG CAAAGCGCCA GCGTCGTTGC GCTGATGGCG
ATCGCGCTCG TCCTTTTGCT GGTGATGATG CGCGACACGA CCGCCGAGAT CGTGGCGCGG
TCGGAAACCG ATCCGCTGTC GAGTGTGCTC AACCGGCGCG GGTTCGAACA GCATGCCGGG
ATTGCGCTGC TGCGCTATGG CGAAACGGCA GTGCTGATCG CGGCCGACCT CGACGATTTC
AAGACGATCA ACGACAGTTT TGGCCATGCC GCGGGCGACG GCGTGATCGC ACATTTCGCC
GCGATGCTGG TCGATGCCGC CCCCGCCGAC GCGATTGTCG GGCGGATCGG CGGCGAGGAG
TTTGCGGTGC TGCTGCCCGA CGCGATGCTG TCCGACGGGC GCATCTATGC CGAAGCGGTG
CGCACCGCCT TTGCCGCGGC ACGGCTGCCG GTGCTGGGAG TCGACCGCGG CTTTACCGCC
TCCTTCGGCG TTGCGCAGCG CGGACCCGGA GATTCGCTGT TCGACCTGCT GCGCCGCGCC
GATGCCGCGC TTTACCGCGC CAAGGCGGCC GGGCGGAACC AGGTGCGCGT GGCGCTGGAG
GAAATGCCGG TGTCGGCGAC GGTGGGCGTC GCATGA
|
|---|
| Protein sequence | MSVAFVLAIN MSVAGLIAAA FAVVAVTNRT ARGAWWLAAG CGLGIVNVGL EFLLTRQVDP
TPTGISIFLV FLLAQSFALI GVASHYRVAP PWIAIAAIWV LTILAVPVIF SLPYGSSPRL
TLYQMPYFAM QSLFAIVIVR SGRRQALDLL LIALQIVAAL IYLAKPLIAA VVGTASSPQG
YMASTYAAIS QSASVVALMA IALVLLLVMM RDTTAEIVAR SETDPLSSVL NRRGFEQHAG
IALLRYGETA VLIAADLDDF KTINDSFGHA AGDGVIAHFA AMLVDAAPAD AIVGRIGGEE
FAVLLPDAML SDGRIYAEAV RTAFAAARLP VLGVDRGFTA SFGVAQRGPG DSLFDLLRRA
DAALYRAKAA GRNQVRVALE EMPVSATVGV A
|
|---|
| |