| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1806 |
|---|
| Symbol | |
|---|
| ID | 4082197 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | - |
|---|
| Start bp | 1901348 |
|---|
| End bp | 1902709 |
|---|
| Gene Length | 1362 bp |
|---|
| Protein Length | 453 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 638010181 |
|---|
| Product | DNA repair protein RadA |
|---|
| Protein accession | YP_616851 |
|---|
| Protein GI | 103487290 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG1066] Predicted ATP-dependent serine protease |
|---|
| TIGRFAM ID | [TIGR00416] DNA repair protein RadA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.75981 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCCAAAG CGAAACGTCA ATATGTCTGC CAGAATTGCG GCTCCGCCAC CTATCGCTGG
CAGGGGCAGT GCGCCGACTG CGGCGAGTGG AACACGCTGG TCGAGGAGGC CGCCGAAACC
GTCTTTTCGG CCAAGCACAA CCTGAGCAAA GGCGGACGGA CGATCCCGCT CGAAACGCTG
AATGCCGAAA GCAGGATGCC CGAGCGGATG CTGTGCGGCA TCGCCGAGTT CGACCGCGCA
CTGGGCGGCG GCTTCGTCGC GGGGTCGGCG ACCTTGATCG GCGGCGATCC GGGGATCGGC
AAATCGACCT TGCTGTTGCA GGCCGCGGGA CGGCTCGCCA AGGCGGGCAG GTCGGTCGTC
TATATCAGCG GCGAGGAGGC GGCGGCGCAG GTGCGATTGC GCGCGCAGCG GCTGGGGCTC
GGCGACGCGC CGGTCGCACT CGCCAGCGCG ACATCGGTGC GCGACATCCT TGCGACGCTC
GGCAGCCGGA CCGCCGATTT CGTCGTGATC GATTCGATCC AGACGATGCA CAGCGACCTG
ATCGACAGCG CGCCGGGGAC GGTGAGCCAG GTCCGCGCGA GCGCGCAGGA GCTGATCCGC
TATGCCAAGG ACAGCGGCGC GGCGATCGTG CTGGTCGGGC ATGTCACCAA GGACGGCACG
ATCGCCGGGC CGCGCGTGCT CGAACATATG GTCGACACGG TGCTGGCGTT CGAGGGTGAG
CGCAGCCATC AATATCGCAT CCTGCGCGCG GTCAAGAACC GCTTTGGCGG CACCGACGAG
ATCGGCGTGT TCGCGATGGG CGAGGAAGGG CTGGGCGAGG TATCGAACCC GTCGAGCCTG
TTCCTGACCG ACCGCAGCCG CGACGTGCCG GGATCGGTGG TGTTCCCCGC GCTGGAAGGC
ACGCGGCCGG TGCTCGTCGA GGTGCAGGCG CTGACCGTGC GCCTCGCGAG CGGCGCAACG
CCGCGGCGGG CCGTTGTCGG ATGGGACAGC GGGCGGCTCG CGATGGTGCT CGCGGTGCTG
GAGGCGCGCT GCGGGCTGCA AATGGGCGCG GCCGAAGTCT ATCTCAATAT CGCCGGCGGA
TACCGGCTGA CCGATCCCGC CGCCGACCTT GCGGTTGCCA CGGCGCTGGT TTCGGCGTTC
AGCGAGCGGC CGGTGCCCCC CGATGCGATC GTCTTCGGCG AACTGTCGCT GTCGGGCGAA
GTGCGCCCGG TATCGCACGA TGCGCTACGT TTGCGCGAAG CAGCAAAGCT CGGTTTTTCA
ACGGCCTGGG GTCCAAATGG CATGAAGCGC GTGAACGGCA TCGGCGTCAC CGGCTTTGCC
CGGCTCGGCG AACTCGTTGA CCTGATGCTC GGTCGCGACT AG
|
|---|
| Protein sequence | MAKAKRQYVC QNCGSATYRW QGQCADCGEW NTLVEEAAET VFSAKHNLSK GGRTIPLETL
NAESRMPERM LCGIAEFDRA LGGGFVAGSA TLIGGDPGIG KSTLLLQAAG RLAKAGRSVV
YISGEEAAAQ VRLRAQRLGL GDAPVALASA TSVRDILATL GSRTADFVVI DSIQTMHSDL
IDSAPGTVSQ VRASAQELIR YAKDSGAAIV LVGHVTKDGT IAGPRVLEHM VDTVLAFEGE
RSHQYRILRA VKNRFGGTDE IGVFAMGEEG LGEVSNPSSL FLTDRSRDVP GSVVFPALEG
TRPVLVEVQA LTVRLASGAT PRRAVVGWDS GRLAMVLAVL EARCGLQMGA AEVYLNIAGG
YRLTDPAADL AVATALVSAF SERPVPPDAI VFGELSLSGE VRPVSHDALR LREAAKLGFS
TAWGPNGMKR VNGIGVTGFA RLGELVDLML GRD
|
|---|
| |