Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1784 |
Symbol | |
ID | 4082251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1882384 |
End bp | 1883958 |
Gene Length | 1575 bp |
Protein Length | 524 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 638010158 |
Product | secretion protein HlyD |
Protein accession | YP_616829 |
Protein GI | 103487268 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0136066 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAATCCGT GCCGCACGAC CATTGATGCC CTCTCGATCC GAGTATTGAT AATGACCCGA TCTCGCCTGC TTGCGGCGCT TGCCGCACCT GTTCTGGCCC TGTCCTTGGC AGGGTGCGGA TTGCTGTCCC CGGACGAACA GGCGGAGGCT GATGGCGGCG GCGGGATCGT GGTCACGCAT TTTGCACCTT CGACCGAGCT GTTCGTCGAA TACCGCCCCT TGGTGCAGGG CAAGGACCGG CGGTTCGATG CGCATCTCAC CTGGCTCGAC AGCTACAAGC CGGTGACCGA TGGCACGCTG ACCGCCGAAC TGGTGTGGCC CGATGGCACG ATAGACACGG CCAAGGCCGG GCCGAGCGAC GTCCAGGGCA TCTTCAGACC GCTGCTGAAG GCGTCCAAAA GCGGCAAGGC GCGGCTGCGC TTGGTGCTGG GCAACCCCAA GGGTCAATCG GTTCACGATC TGGGCGAGGT CACCGTGTGG GCCACGAGCG CAGAAGGCGC CAAGGCCGCT CCCGCCGAAG CCGAGGAGGA AGGCGCGGTC GCTTTCTCCA AGGAAGTGCA ATGGCGCATC CCGTTCATGA CCACGGCGGC GCAGGTCACC AATTTTGCCG AGACAGTGCC GGTCACTGTC GATGTCCAGA TCCAGCCCCA GGCCGAAGCG ATTGTTTCAG CTCCGGTCGA CGGCATTCTG CGCGCGGCGA GGATGCCTGC TGCGGGCGAC CGGGTGCGGC GCGGGCAGGT GCTCGCCAGC ATTTCTTCCA CTCTGGGTGG CGGCGAGGAT GTTGCGACCC TTGATCTTGC CATCAACGAA GCGCGGATCG CCCGCGATGC GGCCGCGCGC GAAGTCGCAC GCATGACGCA GCTGGTCGAA GCCGAAGCCG TGCCGGCACG GCGGCTCGAT GAAGCGCGCA CCGCGTTGCG GATGGCTGAG GCGCAATTGC GGTCGGCTAG TCAGCGCCGT TCAGCTGTGG CAGGCGGCGG CGCGGGCGTG CCGGTGGTTG CCCCAATCTC CGGGGAGGTG CTCGATAGCG CCCTGGTGCA AGGCGCGGGC GTCACCGGCG GACAACGCTT GTTGCGGATC GGCGATCCAG CGGCGCTGTG GCTGGTTGCC CGTGTGCCCG AAGCAATGGC GGCCATGGTC GGGACACCCA ACGGGATCGA CCTGCAACTG CCCGATCGGG TGATCACGCT TGGCGATGGC ACCGGCCAGC TGGTGCAGCG CGGTGCGGCG ATTGACCCAC AGACCCGCAC CCTTTCGGTG ATCTATGCCT GGAACAGCCG CGCACTGCGC CCCGGCCAGC GGGTGCAGGG ACTGCTGCGC ACCGGCTATG CGACACGGCG GCTGACCATT CCGGCCAGCG CCTTGCTCAA CGAAAGCGGG CAGGATGTAG TCTACGTGCA GCTCGGCGGC GAAACCTTCC AGCGCCGCGC GGTCACCGTG CTGGCGCGTA GCGGCACTCG GGTGGCGATA GAAGGCCAGC TCAAAGCAGG CGAACGGGTG GTCACGCGCG GTGCGGCGGC GGTCAGAGCA GCAGCGGCGA CGCCCGATGC TTTCGGCCAC GGCCATGCGC ATTGA
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Protein sequence | MNPCRTTIDA LSIRVLIMTR SRLLAALAAP VLALSLAGCG LLSPDEQAEA DGGGGIVVTH FAPSTELFVE YRPLVQGKDR RFDAHLTWLD SYKPVTDGTL TAELVWPDGT IDTAKAGPSD VQGIFRPLLK ASKSGKARLR LVLGNPKGQS VHDLGEVTVW ATSAEGAKAA PAEAEEEGAV AFSKEVQWRI PFMTTAAQVT NFAETVPVTV DVQIQPQAEA IVSAPVDGIL RAARMPAAGD RVRRGQVLAS ISSTLGGGED VATLDLAINE ARIARDAAAR EVARMTQLVE AEAVPARRLD EARTALRMAE AQLRSASQRR SAVAGGGAGV PVVAPISGEV LDSALVQGAG VTGGQRLLRI GDPAALWLVA RVPEAMAAMV GTPNGIDLQL PDRVITLGDG TGQLVQRGAA IDPQTRTLSV IYAWNSRALR PGQRVQGLLR TGYATRRLTI PASALLNESG QDVVYVQLGG ETFQRRAVTV LARSGTRVAI EGQLKAGERV VTRGAAAVRA AAATPDAFGH GHAH
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