| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1732 |
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| Symbol | |
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| ID | 4081194 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1822922 |
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| End bp | 1824961 |
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| Gene Length | 2040 bp |
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| Protein Length | 679 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 638010107 |
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| Product | lytic transglycosylase, catalytic |
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| Protein accession | YP_616778 |
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| Protein GI | 103487217 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0741] Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 6 |
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| Fosmid unclonability p-value | 0.0596592 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGCCA TGTTCTCGAT GCCCTCCCTG ATGCCCTCCC TTTCGCGCCT TGCGCTGACC
CTGGCGCTCG CCCTGCCCAC CGCCGCCGCT GCCGGCGAAC TCACCCCCGA ACAAATGGCC
TGGTACCGCG CCCAGATGGG TCTGGCGTCG GCATCGGGCC CGCCCCCCGC ACCCAGTTCG
ATCGGCGAAG CCGTGATGGA GTGGCGGCGC CTCACCGCGA ACAGCGGCGC CTCCTTCGAT
CAGCTGTCGC GCTTCCTGAT GGCGAACAAG GGCTGGCCCG ACACCGACAA GCTGCGCCTG
CGGGCCGAAA AGGCGATTGC TCTCGACAGT TTCGATCCCG CGCGCACCCT CGCCTATTTC
GCCGCCTATC CGCCACAGAC GGCCAGCGGC CATCTTCGCA TGGCAATGGC GCTGAACGCA
TCGGGGCGGC GACAGGAAGC CCATGCCGCG GTGCGCCGCG CGTGGACCAG CGGGCCGCTC
GACGATTATG AAACGAGCCG TGTGCTCGGC ATGTTCCCCG GCGCGCTGAC GCTCGCCGAC
CATGATGCGC GCATGGACAA GCTGCTCTGG ATGGGCGCAA CCGCGGCGGC CAGCCGTCAG
ATCGGCTATA CCTCGCCCGA AAAGCGCGCC GTCTTCGCCG CGCGCCTCGC GATGCGCAGC
GGCGCGGTCG ATGCCGCGCT TCAGGCGTCG GCCGTCGAAA GCGCCAATCC GTCGATCGTC
CGCACCGACC CCGGCTATAT CACCGACAAG GCGACGTGGC TCCGCGCGTC GGGTCGCGTA
GGTGAAGCGC GCGCGCTGCT CGCCGCGCCG CGATCGCTGG CGCAGGCGCC GACCGATGCC
GAGGAGTGGC TGGAAACCCT GCTCACCAAC GCACGGCTGG CCGAGAGCAG CGGCGACAAG
CTGAGCGCCT TCAACATCGC GCGCCAGCTC GACGACGCAT TCCCCCCCGG CACCGTGATC
CGCGAAACGC CGCTCGGGGT GCGCGACGAT TATACCTCGC TCGCCTGGCT GGCGGGCCAG
CTTGCCTTCA GGGATCTCGG TCGCCCGGCC GACGCCGAGA AGCTCTACCG CGCCTATGGC
GAAGCGGCAC GCTCGGCGCA GACGCGCACC AAGGGCTTCT ACTGGGCCGG CCGCGCCGCA
CTCGCGGCAG GCGACCGCGA CGCGGCAAAC GCCCATTTCG CTGATGCGGC GCAGCATTAT
GACCAATTCT ATGGCCAGCT GGCGCTCGAA CGGCTGGGCC GTCCGCAACC CCGACCGGCG
CCCAATCCGA CGATCGAGGT CAGCGCCGAC GAACAGCGCG CGTTCGAGGA CGACCGGCTG
GTCCGCGCCG CGCGCGCGCT GGGCGAAATC GGCGCCTGGC GCGAGCAGTC GCTGTTCCTC
CGCGCGCTCG CGCAAAAGGC CAGCACGCCC GCCGACCATG TGCTCGCGGG CAAGCTCGCC
GCGCAGATCG GCCGCCCCGA CCTCGGCGTG ATGATCGGCC GCAGCGCGCA GGCGAACAGC
CTCGATGCGG TCGAGGTTTC GGGCTTCCCC ACCGTGCGTG TCCCCGCCGG GCACGAGGGC
AACTGGACCT TCATCCACGC GATCACGCGG CAGGAAAGCC AGTTCGACCG CGCCGCGATC
AGCCACGCCG GGGCGCGCGG CATGATGCAG CTGATGCCCG GCACCGCGCG CGAGGTCGCG
GGCAAGCTGG GGCTGAGCTA CGACGGCGGC GCGCTCACCA CCGACACCAA CTACAATATG
ACGCTCGGTT CGACCTATTT TCAGCAGATG CTGCGCTATT ATGGCGGCAG CTATCCGCTC
GCGGTCGCGG CCTATAACGC CGGGCCGGGC AATGTGAACA AATGGCTGCG CGCCAATGGC
GACCCGCGCA CCGGCGCCAT CGACATTCTC GACTGGATCG AGGCGATCCC GATCTTCGAG
ACCAGAAATT ATGTCCAGCG CGTGCTCGAA AATGCCGTGG TCTACGACAC GCTGCGCGAC
GGAAAGACGC TTCCCAGGGC GCCGCTGAGC TTCTATCTCG GCAAGCGCAC ACCGGGATAA
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| Protein sequence | MAAMFSMPSL MPSLSRLALT LALALPTAAA AGELTPEQMA WYRAQMGLAS ASGPPPAPSS
IGEAVMEWRR LTANSGASFD QLSRFLMANK GWPDTDKLRL RAEKAIALDS FDPARTLAYF
AAYPPQTASG HLRMAMALNA SGRRQEAHAA VRRAWTSGPL DDYETSRVLG MFPGALTLAD
HDARMDKLLW MGATAAASRQ IGYTSPEKRA VFAARLAMRS GAVDAALQAS AVESANPSIV
RTDPGYITDK ATWLRASGRV GEARALLAAP RSLAQAPTDA EEWLETLLTN ARLAESSGDK
LSAFNIARQL DDAFPPGTVI RETPLGVRDD YTSLAWLAGQ LAFRDLGRPA DAEKLYRAYG
EAARSAQTRT KGFYWAGRAA LAAGDRDAAN AHFADAAQHY DQFYGQLALE RLGRPQPRPA
PNPTIEVSAD EQRAFEDDRL VRAARALGEI GAWREQSLFL RALAQKASTP ADHVLAGKLA
AQIGRPDLGV MIGRSAQANS LDAVEVSGFP TVRVPAGHEG NWTFIHAITR QESQFDRAAI
SHAGARGMMQ LMPGTAREVA GKLGLSYDGG ALTTDTNYNM TLGSTYFQQM LRYYGGSYPL
AVAAYNAGPG NVNKWLRANG DPRTGAIDIL DWIEAIPIFE TRNYVQRVLE NAVVYDTLRD
GKTLPRAPLS FYLGKRTPG
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