Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1585 |
Symbol | |
ID | 4083022 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1660411 |
End bp | 1662372 |
Gene Length | 1962 bp |
Protein Length | 653 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638009954 |
Product | polysaccharide biosynthesis protein CapD |
Protein accession | YP_616631 |
Protein GI | 103487070 |
COG category | [G] Carbohydrate transport and metabolism [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG1086] Predicted nucleoside-diphosphate sugar epimerases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.216403 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.968528 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGTTTGAAC GATTCTTCAC TGATGCTTCG ACCCAAATGA TCACGTTCGC TGCGCGTATG CTTTTCTGGC CGCGTTGGGG AAAGCTGCTG CTTGTTCTCG TTTGCGACGC GATTTTGGGA CTGGTAGCGT CCGCGATGGC CTTTTCCATT CGGTTGGGCG AATGGAGTTC CGATGACTGG CCGGTCCTGC GCTTTGGCCT CACCATGTTG TTGCTATGGT TTCCGATTGC CTTTTGGCGC GGGATCTATT CGGCCATATT TCGATACGCC GGTCGCGGGG TATTGATCTC GCTGGCGGTG GCCGTCGCCA TGATGACGGT GCCGCTGATC GTCATCTATA TGTATGTCGG TTATCCAGGT GTGCCTCGGA CGATCGCCAT TCTCGGCCCG ATCCTGTTCC TGCTGCTTAT GGGAGTCGCG CGGATCGTCG GCCGCTATGT GCTGGTGGAT CTTTTCCATT CGCGTGACTT TGTGGGGCGC GAGCGGAACG TGCTCATCTA TGGTGCCGGC ACGACCGGTC AGCGATTGGC AGCATCTTTG AGTTCCGAAG GCGGCCTGAG GGTTGCGGGC TTTCTTGACG ATGATCGTGA CAAGCGGGGC AAGCGAATAG ACGGTGCCCG CATCTTTCAC AGCGACGATA TCGAAAGCGT GCTGAATCAG CTCGGCGTCA CCGACATCGT TCTGGCGATG ACGCAGGTCG GCGATGAGCG GCGCAAGCAG ATCATCCGGA ATCTGGCGCG GTTCAGCATA AACGTCCAGA TGCTTCCACC CGTCAGGGAC ATTCTTGAAG GCAAGATTTC GGCAAGCGCC ATCCGTCCGA TAGAGGTCGA GGATCTGTTG GGTCGCCCGC CGGTGGCACC CGACCGGGAA TTGTTGTCGC GGTCCGTCAA GGGCAAGCAT GTGATGGTAA CCGGCGCCGG CGGTTCGATC GGCAGCGAAT TGTGCCGACA GATACTACGG CTGGCACCGC ACTCGCTCAC CCTCGTCGAA TCCAGTGAGT TTTCCCTCTT CAGGCTTCAA AACGAACTGG AAGCGATCCT CGATCGGCTC CCCGACGGTA TCCGGCCCCT TCTTCGGGCG AAATTGTCGA ATGTTGCGGA TGCCGCAGCG GTGGAGCGCC TGTTCGCTGA TGAGGCGCCC GACACCATCT ATCATGCCGC GGCGTACAAG CATGTGCCGC TGCTGGAGGA GAACCCGCTT GACGGCGTCG CCAACAATAT CCGCGGCACA CGCAACATGG CCGAGATGGC CGTCAAAAAG GGTGTCGGTC GCTTTATTCT GATCAGCACC GACAAGGCCG TGCGTCCTCC GAACGTGATG GGGGCCAGCA AACGCGTCTG CGAGATGCTG CTGCAGGACA TGAGCCGGTC GCGGAAGCCC GACGGCACCA TTTTCTCGAT GGTTCGCTTC GGCAACGTGC TGGGTTCGAG CGGATCGGTC GTTCCGACCT TTCGACAACA GATCGAACGC GGCGGCCCGG TGACGGTGAC CCACCGCGAT GTTACACGCT ATTTCATGAC GATCCCCGAA GCGGCCGAGC TGGTGATCCA GGCAGGCAGC ATGGCGACGG GCGGCGAAGT GTTCCTGCTC GATATGGGGG AGCCGGTGCG CATCTGGGAC CTCGCCGAAA CCATGGTGCG GCTGTCCGGC CTTACGATCC GTTCGTCCGC CAACCCCGGT GGCAGCATCG AGATCGTCGA GCGCGGGTTG CGCAAGGGCG AAAAATTGTT CGAGGAACTT CTGGTCGGCG AGGAATCGCA GCCCACCGCG CATCCGCGGA TCATGCAGGC GCGCGAAGAA TGTGTCAGCC ACGAGTGCCT TTATGAATAT CTGACGGCAA TCGAGGCCGC GATTGCGGCG GCCGATCCCC GTGGTTGCCG AGCCGCATTG AAACGGCTAG TGCCCACCCT GCACGATCAG TCCCCAGCAA CCGTCCCCGC GCCGGAACAT TCAACTAGAT GA
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Protein sequence | MFERFFTDAS TQMITFAARM LFWPRWGKLL LVLVCDAILG LVASAMAFSI RLGEWSSDDW PVLRFGLTML LLWFPIAFWR GIYSAIFRYA GRGVLISLAV AVAMMTVPLI VIYMYVGYPG VPRTIAILGP ILFLLLMGVA RIVGRYVLVD LFHSRDFVGR ERNVLIYGAG TTGQRLAASL SSEGGLRVAG FLDDDRDKRG KRIDGARIFH SDDIESVLNQ LGVTDIVLAM TQVGDERRKQ IIRNLARFSI NVQMLPPVRD ILEGKISASA IRPIEVEDLL GRPPVAPDRE LLSRSVKGKH VMVTGAGGSI GSELCRQILR LAPHSLTLVE SSEFSLFRLQ NELEAILDRL PDGIRPLLRA KLSNVADAAA VERLFADEAP DTIYHAAAYK HVPLLEENPL DGVANNIRGT RNMAEMAVKK GVGRFILIST DKAVRPPNVM GASKRVCEML LQDMSRSRKP DGTIFSMVRF GNVLGSSGSV VPTFRQQIER GGPVTVTHRD VTRYFMTIPE AAELVIQAGS MATGGEVFLL DMGEPVRIWD LAETMVRLSG LTIRSSANPG GSIEIVERGL RKGEKLFEEL LVGEESQPTA HPRIMQAREE CVSHECLYEY LTAIEAAIAA ADPRGCRAAL KRLVPTLHDQ SPATVPAPEH STR
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