Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1404 |
Symbol | |
ID | 4081760 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1458198 |
End bp | 1459868 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638009770 |
Product | cytochrome-c oxidase |
Protein accession | YP_616451 |
Protein GI | 103486890 |
COG category | [C] Energy production and conversion |
COG ID | [COG0843] Heme/copper-type cytochrome/quinol oxidases, subunit 1 |
TIGRFAM ID | [TIGR02891] cytochrome c oxidase, subunit I |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.29775 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCGATA TCGCAGCGAC TGCACCCGCG CACGGCCATG CCGATCACGC GCACGACCAT GATCACGACA CTCCGGGCTT TTTCGTCCGC TGGTTCATGT CGACGAACCA CAAGGACATC GGCACGCTCT ACCTGATCTT CGCGATCGTC GCGGGGATCG TGGGCGGCGT GCTGTCGGGC ATGATGCGCC TCGAACTCGC CGAACCGGGC GTGCAATATC TGGGCGGCTG GGCCGAAATG CTCGGCGGCG CGGGCGACGA GGTTGCGGGC AAGCATTTCT GGAACGTGAT GATCACCGCG CACGGGCTGA TCATGGTCTT CTTCATGGTC ATGCCCGCGA TGATCGGCGG CTTCGGCAAC TGGTTCGTGC CGCTGATGAT CGGCGCGCCC GACATGGCCT TCCCGCGCAT GAACAATGTC TCCTTCTGGC TGACCTTCGT GGCGTTCGTC ATGCTCGTCG GATCGATGTT CGTGCCCGGC GGCAGCGGCC TTGGCGCCGG CACCGGCTGG ACGGTCTATG CGCCGCTGTC GACCAGTGGT TCGGCCGGGC CCGCGGTCGA CATGGCGATC TTCTCGCTTC ACCTTGCGGG CGCGGCGTCG ATCCTCGGCG CGATCAACTT CATCACGACC ATCTTCAACA TGCGCGCGCC GGGCATGACG CTGCACAAGA TGCCGCTGTT CGTATGGTCG GTGCTCGTCA CCGCCTTCCT GCTGCTGCTC GCGCTTCCGG TGCTTGCCGC GGCGATCACG ATGCTGCTCA CCGACCGCAA TTTCGGCACC ACCTTCTATG ATGCGGCGGG CGGCGGCGAT CCCGTGCTTT ACCAGCATCT CTTCTGGTTC TTCGGCCACC CCGAAGTCTA TATCATGATC CTGCCGGGCT TCGGCATCGT CAGCCAGGTC ATCTCGACCT TCAGCCGCAA GCCGGTGTTC GGCTATCTCG GCATGGCCTA TGCCATGGTG GCGATCGGTG TCGTCGGCTT CATCGTGTGG GCGCACCACA TGTTCACCGT CGGCATGAGC GTGAACCTGA AGATGTATTT CACCGCGGCG ACGATGGTGA TCGCGGTCCC GACCGGCATC AAGATATTCA GTTGGATCGC GACGATGTGG GGCGGGTCGA TGAGCTTCAA GACCCCGATG GTCTGGTCGC TGGGCTTCAT CTTCATGTTC ACCGTCGGCG GCGTGACCGG CGTGGTTCTC GCCAATGGCG GCGTCGATAC CGCGCTTCAC GACACCTATT ATGTCGTCGC GCACTTCCAC TATGTGCTTT CGCTCGGCGC GGTCTTCTCG CTCTTCGCCG GTTTCTATTA CTGGTTCCCG AAGATGTCGG GCCGGATGTA CAACGAGGCG CTGGGCCAGC TGCACTTCTG GATCTTCTTC ATCGGCGTGA ACGTGCTCTT CTTCCCCCAG CACTTCCTGG GTCAGCAGGG AATGCCGCGC CGTTACCCCG ACTATCCCGA CGCCTATGCC TTCTGGCACC TCATCTCGTC CTGGGGCTAT GTCATCATGG GCGTGGGCGT GCTGATCTTC TTCGCGAACA TTCTCTGGTC GCTGGTCGCG GGGAAGAAGG CGGCGGACAA TCCGTGGGGC GAAGGCGCAA CGACGCTCGA ATGGACGCTG TCGAGCCCGC CGCCGTTCCA CCAGTTCAAC GAACTGCCGC GTATCGCCTG A
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Protein sequence | MTDIAATAPA HGHADHAHDH DHDTPGFFVR WFMSTNHKDI GTLYLIFAIV AGIVGGVLSG MMRLELAEPG VQYLGGWAEM LGGAGDEVAG KHFWNVMITA HGLIMVFFMV MPAMIGGFGN WFVPLMIGAP DMAFPRMNNV SFWLTFVAFV MLVGSMFVPG GSGLGAGTGW TVYAPLSTSG SAGPAVDMAI FSLHLAGAAS ILGAINFITT IFNMRAPGMT LHKMPLFVWS VLVTAFLLLL ALPVLAAAIT MLLTDRNFGT TFYDAAGGGD PVLYQHLFWF FGHPEVYIMI LPGFGIVSQV ISTFSRKPVF GYLGMAYAMV AIGVVGFIVW AHHMFTVGMS VNLKMYFTAA TMVIAVPTGI KIFSWIATMW GGSMSFKTPM VWSLGFIFMF TVGGVTGVVL ANGGVDTALH DTYYVVAHFH YVLSLGAVFS LFAGFYYWFP KMSGRMYNEA LGQLHFWIFF IGVNVLFFPQ HFLGQQGMPR RYPDYPDAYA FWHLISSWGY VIMGVGVLIF FANILWSLVA GKKAADNPWG EGATTLEWTL SSPPPFHQFN ELPRIA
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