Gene Sala_1245 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_1245 
Symbol 
ID4080316 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand
Start bp1295876 
End bp1296658 
Gene Length783 bp 
Protein Length260 aa 
Translation table11 
GC content64% 
IMG OID638009605 
Productshort-chain dehydrogenase/reductase SDR 
Protein accessionYP_616293 
Protein GI103486732 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only 
COG ID[COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value0.0740781 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAATCG ATTCCGCGAC CGCCGCCGTC GTCACCGGTG GCGCCTCCGG CCTCGGCCGC 
GCGACCGCCG AAGCGCTTGC GGCCGCCGGC GTGAAGGTTG CGATCTTCGA TATCAACGAC
GCACTCGGCG AGGAGGTGGC GGCGTCGATC GGCGGGCTGT TCGTCCATGT CGATATCACC
GACGAACAAT CGGTGCTCGA CGGCTATGCC AAGGCGCGTG CGGCAAACGG GCAGGAACGT
ATCTGCGTTC ACTGTGCGAT GACCTCGCGC CGCGGCAAGA CACTCGCCTA TGACAAGGAA
AGCGGCCGAT ACCGCCGCAC GCCAACCGCC GATTATGCCT TCGGCGTCGA AGGCATCCTC
ACCGCCAGCT ATCGCGTCGC GTCAATTGCG GCCGAAGGCA TGGCCACCCT TCCCGAACTG
GAAGACGGCG AACGCGGCGC GATCATCCTC ACCGCTTCGG TCGCGGCGCA GGATGGCCAG
ATCGGCCAGG TCATCTATGG CTCGGCGAAG GCGGGTGTGA ACGGGCTGGT GCTGCCGATG
GCACGCGACC TGATGGACCT CGGCATTCGC GTCAATGCGA TCATGCCGGG GGTGTTCGGC
ACGCCCTTGC TCAACAATAT GAACCCGAAG GTCAGGGAAA GCCTCGAAGC CTCCGTCCCC
TTCCCCAAGC GGCTCGGCAA GGCCGAAGAA TATGCCAGTC TCGCCATGGA GATGATCCGC
AATACCTATT TCAACGGTCA GGCCGTCCGC CTCGACGGCG CGATCCGCAT GGCTCCGCGT
TAA
 
Protein sequence
MKIDSATAAV VTGGASGLGR ATAEALAAAG VKVAIFDIND ALGEEVAASI GGLFVHVDIT 
DEQSVLDGYA KARAANGQER ICVHCAMTSR RGKTLAYDKE SGRYRRTPTA DYAFGVEGIL
TASYRVASIA AEGMATLPEL EDGERGAIIL TASVAAQDGQ IGQVIYGSAK AGVNGLVLPM
ARDLMDLGIR VNAIMPGVFG TPLLNNMNPK VRESLEASVP FPKRLGKAEE YASLAMEMIR
NTYFNGQAVR LDGAIRMAPR