Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_1245 |
Symbol | |
ID | 4080316 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 1295876 |
End bp | 1296658 |
Gene Length | 783 bp |
Protein Length | 260 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638009605 |
Product | short-chain dehydrogenase/reductase SDR |
Protein accession | YP_616293 |
Protein GI | 103486732 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism [R] General function prediction only |
COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 0.0740781 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAATCG ATTCCGCGAC CGCCGCCGTC GTCACCGGTG GCGCCTCCGG CCTCGGCCGC GCGACCGCCG AAGCGCTTGC GGCCGCCGGC GTGAAGGTTG CGATCTTCGA TATCAACGAC GCACTCGGCG AGGAGGTGGC GGCGTCGATC GGCGGGCTGT TCGTCCATGT CGATATCACC GACGAACAAT CGGTGCTCGA CGGCTATGCC AAGGCGCGTG CGGCAAACGG GCAGGAACGT ATCTGCGTTC ACTGTGCGAT GACCTCGCGC CGCGGCAAGA CACTCGCCTA TGACAAGGAA AGCGGCCGAT ACCGCCGCAC GCCAACCGCC GATTATGCCT TCGGCGTCGA AGGCATCCTC ACCGCCAGCT ATCGCGTCGC GTCAATTGCG GCCGAAGGCA TGGCCACCCT TCCCGAACTG GAAGACGGCG AACGCGGCGC GATCATCCTC ACCGCTTCGG TCGCGGCGCA GGATGGCCAG ATCGGCCAGG TCATCTATGG CTCGGCGAAG GCGGGTGTGA ACGGGCTGGT GCTGCCGATG GCACGCGACC TGATGGACCT CGGCATTCGC GTCAATGCGA TCATGCCGGG GGTGTTCGGC ACGCCCTTGC TCAACAATAT GAACCCGAAG GTCAGGGAAA GCCTCGAAGC CTCCGTCCCC TTCCCCAAGC GGCTCGGCAA GGCCGAAGAA TATGCCAGTC TCGCCATGGA GATGATCCGC AATACCTATT TCAACGGTCA GGCCGTCCGC CTCGACGGCG CGATCCGCAT GGCTCCGCGT TAA
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Protein sequence | MKIDSATAAV VTGGASGLGR ATAEALAAAG VKVAIFDIND ALGEEVAASI GGLFVHVDIT DEQSVLDGYA KARAANGQER ICVHCAMTSR RGKTLAYDKE SGRYRRTPTA DYAFGVEGIL TASYRVASIA AEGMATLPEL EDGERGAIIL TASVAAQDGQ IGQVIYGSAK AGVNGLVLPM ARDLMDLGIR VNAIMPGVFG TPLLNNMNPK VRESLEASVP FPKRLGKAEE YASLAMEMIR NTYFNGQAVR LDGAIRMAPR
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