| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_1175 |
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| Symbol | |
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| ID | 4080823 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 1211576 |
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| End bp | 1212826 |
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| Gene Length | 1251 bp |
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| Protein Length | 416 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638009536 |
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| Product | LolC/E family lipoprotein releasing system, transmembrane protein |
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| Protein accession | YP_616224 |
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| Protein GI | 103486663 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG4591] ABC-type transport system, involved in lipoprotein release, permease component |
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| TIGRFAM ID | [TIGR02212] lipoprotein releasing system, transmembrane protein, LolC/E family |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 0.433535 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATTCTCC GCCCTTATGA GCGCACCATC TTCAAACGCT ATATGCTGCC GCAGCGCGGC
GAAGGCTTCA TCTTCGTCGC GGCGGCGTTC AGCTTTGTCG CCGTGACGCT GGGCGTCGCG
GCGCTGGTCG TCGTGATGAG CGTGATGAAC GGCGTACGCA GCGACCTGTT CGACAAGATC
GTCGGATTGA ACGGCCATGC CGTGGTGCAG GGGTTCGGCG GGCGGCTCGA CGACTGGCGC
GACGTGCTGA AGCAGGCGAA GGCGACGCCG GGGGTCACGT CGGCGACGCC GCTGATCGAA
CAGCCGCTGC TCACGACCTT CGGCGGGCGC GTCGAAGCCG TATTGGTGCG CGGGATGACC
GTGCCGGACA TCCGCAGCAA TGCGGTGCTG GGCGGCAAGG TGCTGCAAGG CAGCCTGAAC
AGCCTGACGG CGGGTTCGGG CAATGTCGCC ATCGGCAGCG AGCTGGCGCG CAACCTGGGC
GCGACGGTCG GGTCGAACAT CACGATCATC AATCCGCAAG GGCGTTCGAC GCCCTTTGGC
ACGGTGCCGC GCGAAATCGG CTACCGCGTG TCGGCGGTGT TCGAGATCGG CGTGTATGAC
TTCGACAAGG CCTATGTCGT CATGCCGATG GAGGATGCGC AGTTGCTGCT GCTCAGCGGC
GACCAGATCG GCATGATCGA AATCAAGACC GAAGACCCCG ACCGCGTCGG TGAGATTTTG
CAGCCGCTCG CCGAAAAACT GGCGGCGCAG GCGGTCGTGT CCGACTGGCG ATCGATGAAC
GCCAGCCTGT TCGAAGCGTT GTCGATCGAG CGTGTCGCGA TGTTCGTCAT CCTGTCGCTC
ATCATCCTGG TTGCCTCTTT CAACATCATT TCCTCACTCA TCATGCTGGT GCGCGCGAAG
ACGCGCGACA TGGCGATATT GCGCACGATG GGGGCGCCGC GCGATTCGGT CATGCGCATC
TTCATGGCGA TCGGCCTGTC GATCGGCATC GCGGGAACGA TCGTCGGCAT GGCCGTCGGC
TTCGGGCTGC TCTATTTCCG GCAGGGTGTG CTGCGCGGGG TCGAGTTTCT GACCGGGCAG
CCTTTGTGGG ATCCGTCGAT CCGGTTCCTG ACGGAATTGC CCTCGAAACC CGACCCGGTC
GAGATTGTCG GCATCGCGGT GATGGTGATC GTCTTCAGCT TCCTCGCGAC GCTCTATCCC
GCCTACAAGG CCGCGAATAC CGACCCGGTG CAGGTGCTGC GCTATGAATG A
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| Protein sequence | MILRPYERTI FKRYMLPQRG EGFIFVAAAF SFVAVTLGVA ALVVVMSVMN GVRSDLFDKI
VGLNGHAVVQ GFGGRLDDWR DVLKQAKATP GVTSATPLIE QPLLTTFGGR VEAVLVRGMT
VPDIRSNAVL GGKVLQGSLN SLTAGSGNVA IGSELARNLG ATVGSNITII NPQGRSTPFG
TVPREIGYRV SAVFEIGVYD FDKAYVVMPM EDAQLLLLSG DQIGMIEIKT EDPDRVGEIL
QPLAEKLAAQ AVVSDWRSMN ASLFEALSIE RVAMFVILSL IILVASFNII SSLIMLVRAK
TRDMAILRTM GAPRDSVMRI FMAIGLSIGI AGTIVGMAVG FGLLYFRQGV LRGVEFLTGQ
PLWDPSIRFL TELPSKPDPV EIVGIAVMVI VFSFLATLYP AYKAANTDPV QVLRYE
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