Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0985 |
Symbol | carB |
ID | 4081673 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 1009907 |
End bp | 1013227 |
Gene Length | 3321 bp |
Protein Length | 1106 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 638009345 |
Product | carbamoyl phosphate synthase large subunit |
Protein accession | YP_616035 |
Protein GI | 103486474 |
COG category | [E] Amino acid transport and metabolism [F] Nucleotide transport and metabolism |
COG ID | [COG0458] Carbamoylphosphate synthase large subunit (split gene in MJ) |
TIGRFAM ID | [TIGR01369] carbamoyl-phosphate synthase, large subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.557617 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCCCAAAA GAACCGACAT CCAATCCATC CTCGTCATCG GCGCCGGCCC GATCGTTATC GGTCAGGCGT GCGAGTTCGA CTATTCGGGG ACGCAGGCGA TCAAGGCGCT GAAGGAGGAG GGCTATCGCA TCGTCCTCGT CAACTCCAAC CCCGCGACGA TCATGACCGA TCCCGACCTT GCCGACGCCA CCTATGTCGA GCCGATCACG CCCGAGATCG TCGCGAAGAT CATCGCCAAG GAGCGCCCCG ATGCGGTGCT GCCGACGATG GGCGGGCAGA CCGCGCTCAA CACCGCGCTG GCGCTGTTCA ACGACGGGAC GCTGGCGAAA TATGGCGTCG AGATGATCGG CGCCAAGGCG GAAGCGATCG ACAAGGCCGA GGACCGGCAG AAGTTCCGCG AGGCGATGGA CAGGATCGGG CTGGAAAGCG CGCGCAGCGG CATTGCGCAC ACGCTGGAGG AGGCCTTTGC GGTGCTCGAA CGCACCGGGC TGCCGTCGAT CATCCGCCCG TCGTTCACGC TCGGCGGCAC CGGCGGCGGC ATCGCCTATA ACCGCGAGGA GTTCGAGCAG ATCGTCCGCG GCGGCCTGAT CGCCTCGCCG ACCACCGAAG TCCTGATCGA GGAATCGCTC CTCGGCTGGA AAGAATATGA GATGGAGGTG GTGCGCGACG CCAAGGACAA TTGCATCATC ATCTGTTCGA TCGAAAATGT CGATCCGATG GGCGTGCATA CGGGCGACAG CATCACCGTC GCCCCCGCGC TGACGCTGAC CGACAAGGAA TATCAGATCA TGCGGAGCGC GAGCATCGCG GTGCTGCGCG AGATCGGGGT CGAGACCGGC GGGTCGAACG TCCAGTTCGC GGTGAACCCG AAGGACGGCC GCCTGATCGT GATCGAGATG AACCCGCGCG TGTCGCGCTC GTCGGCGCTC GCGTCGAAGG CGACGGGTTT CCCGATTGCG AAGGTCGCGG CGAAGCTGGC GGTCGGCTAC ACCCTCGACG AGATCATGAA CGACATCACC GGCGTGACCC CGGCATCGTT CGAGCCGACG ATCGACTATG TCGTCACCAA GATCCCGCGC TTTGCTTTTG AAAAGTTCAA GGGCGCCGAA GCGACGCTGT CGACCGCGAT GAAGTCGGTC GGCGAAGTGA TGGCGATCGG GCGGACGATC CACGAGTCGC TGCAAAAGGC GCTGCGCGGC CTGGAAACGG GGCTTTCGGG CTTCAATTTC GTCGACCGGC TGAAGGGCGC GAGCCACGAG CAATTGCGCA ACGAACTGGC GCAGCGCACC CCCGACCGGT TGCTCAACGC GGCGCAGGCG ATCCGCGAAG GGCTGCCGCT TGAAGAGATC AACCGCGTCG CCGGTTACGA CATGTGGTTC CTTGAGCGCA TCGCCGAAAT CGTCGAGGCC GAAAAGCAGG TGTGCGTCAA CGGCCTGCCG CGCGATGCCG AAGGGCTGCG GAAGCTCAAG GCGATGGGTT TTTCCGACAA GCGCCTTGCC TATCTGGCGC TCCAGTCGGC GAACCTCCAC CCCGGCACGC GCCGCGCGAC CGCGCGCGGC AGCGGGCTGA TCCACGAGGC GGTGAAGGCG ATGACCGGCG GCGTGACCGA GGGCGAAGTG CGCGCGCTGC GCCACAAGCT CGGCGTGCGG CCGGTGTTCA AGACGATCGA CACCTGCGCC GCGGAGTTTC AGGCAAAAAC GCCCTATCTC TATTCGACCT ATGAAGCGCC GACCTTTGGC GAGCCCGAGT GCGAGGCGAA CCCGTCGGAT CGCCGGAAGA TCGTCATCCT GGGCGGCGGT CCGAACCGCA TCGGGCAGGG GATCGAGTTC GATTATTGCT GCTGCCACGC CTGCTTCGCG TTGGAAGAGG CGGGGTATGA GACGATCATG ATCAACTGCA ACCCGGAGAC GGTGAGCACC GATTATGACA CGTCGGACCG CCTCTATTTC GAGCCGCTGA CCGCCGAAGA TGTGCTCGAA ATCCTGCACG TCGAAATGTC GAAGGGCGAG CTGGTCGGCG TGATCGTCCA GTTCGGCGGG CAGACGCCAT TGAAGCTCGC GCAGGCGCTG AGCGATGCGG GCATCCCGAT CCTCGGCACC TCGCCCGATG CGATCGACCT CGCCGAAGAT CGCGAGCGTT TCGCCGCGCT TGTCAACAAG CTCGGCCTGA AACAGCCCGA AAATGGCATC GCGCGCAGCC GCGAGGAAGC GATCGCGGTC GCGGCGCGCA TCGGCTATCC GGTGCTCACG CGCCCCAGCT ATGTCCTCGG CGGCCGCGCG ATGGAGATCG TCGACGATCA GGCGCAGCTC GAAAATTACA TCGAGACCGC GGTGCAGGTG TCGGGCACAT CGCCGGTGCT GATCGACCGT TATCTGCGCG ACGCGATCGA GGTCGATGTC GATGCGCTCT GCGACGGCAC CGACGTGGTG GTTGCGGGCG TGCTCCAGCA TATCGAGGAA GCCGGGGTCC ATTCGGGCGA CAGCGCCTGT TCGATCCCGC CCTACAGCCT GCCCGCCGAC ATCATCGCGG AGATCGAGCG GCAGACCGAT GCACTGGCGC GCGCGCTGGG CGTGCGCGGG CTGATGAACG TCCAATATGC GGTGAAGGAC GGCGAGGTCT ATCTGATCGA GGTCAACCCG CGCGCCAGCC GCACGGTGCC CTTCGTCGCG AAAGCAGTGG GGTCGCCGAT CGCCAAGATC GCGGCGCGCG TGATGGCGGG CGAAAAGCTG GCCGACCTGC CGAAGATCAA CCGCGACATC AAACATGTCG CGGTGAAGGA AGCGGTGTTC CCCTTCGCGC GCTTCCCCGG CACCGACCCG GTGCTGTCGC CCGAGATGAA GTCCACCGGC GAAGTCATGG GAATCGATCG CGATTTCAAC CTGGCCTTTG CCAAGGCACA GCTTGGCGCG GGCGACCGGC TGCCGACCGA TGGCCGCCTG TTCGTATCGG TGAAGGACAG CGACAAGCCG CGAATCGTCG GCGCGGTAAA ACAGCTTTGC GCGTGGGGGT GGAAGGTGAT CGCGACCGGC GGCACCGCCG ACTATCTGGC GGGGCAGGGG ATCGAGGTCG AGCGTGTGAA CAAGGTTGCC GAAGGCCGCC CGCACATCGT CGACCGGATC AAGGACGGCG ACGTGCAGCT GATCTTCAAC ACCACCGAAG GCTGGCAATC GCTGCAGGAT TCGCAGTCGA TCCGCGCTTC GGCGCTTGCG GCCGACATCG CCTATTATAC CACCGCGGCG GCCAGCGACG CGGCGACACA GGCGATCGGG GCGCTGCGCG CGCACTCCCT TGAAGTGAAG CCGCTTCAGG ACTATTATTG A
|
Protein sequence | MPKRTDIQSI LVIGAGPIVI GQACEFDYSG TQAIKALKEE GYRIVLVNSN PATIMTDPDL ADATYVEPIT PEIVAKIIAK ERPDAVLPTM GGQTALNTAL ALFNDGTLAK YGVEMIGAKA EAIDKAEDRQ KFREAMDRIG LESARSGIAH TLEEAFAVLE RTGLPSIIRP SFTLGGTGGG IAYNREEFEQ IVRGGLIASP TTEVLIEESL LGWKEYEMEV VRDAKDNCII ICSIENVDPM GVHTGDSITV APALTLTDKE YQIMRSASIA VLREIGVETG GSNVQFAVNP KDGRLIVIEM NPRVSRSSAL ASKATGFPIA KVAAKLAVGY TLDEIMNDIT GVTPASFEPT IDYVVTKIPR FAFEKFKGAE ATLSTAMKSV GEVMAIGRTI HESLQKALRG LETGLSGFNF VDRLKGASHE QLRNELAQRT PDRLLNAAQA IREGLPLEEI NRVAGYDMWF LERIAEIVEA EKQVCVNGLP RDAEGLRKLK AMGFSDKRLA YLALQSANLH PGTRRATARG SGLIHEAVKA MTGGVTEGEV RALRHKLGVR PVFKTIDTCA AEFQAKTPYL YSTYEAPTFG EPECEANPSD RRKIVILGGG PNRIGQGIEF DYCCCHACFA LEEAGYETIM INCNPETVST DYDTSDRLYF EPLTAEDVLE ILHVEMSKGE LVGVIVQFGG QTPLKLAQAL SDAGIPILGT SPDAIDLAED RERFAALVNK LGLKQPENGI ARSREEAIAV AARIGYPVLT RPSYVLGGRA MEIVDDQAQL ENYIETAVQV SGTSPVLIDR YLRDAIEVDV DALCDGTDVV VAGVLQHIEE AGVHSGDSAC SIPPYSLPAD IIAEIERQTD ALARALGVRG LMNVQYAVKD GEVYLIEVNP RASRTVPFVA KAVGSPIAKI AARVMAGEKL ADLPKINRDI KHVAVKEAVF PFARFPGTDP VLSPEMKSTG EVMGIDRDFN LAFAKAQLGA GDRLPTDGRL FVSVKDSDKP RIVGAVKQLC AWGWKVIATG GTADYLAGQG IEVERVNKVA EGRPHIVDRI KDGDVQLIFN TTEGWQSLQD SQSIRASALA ADIAYYTTAA ASDAATQAIG ALRAHSLEVK PLQDYY
|
| |