Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0642 |
Symbol | |
ID | 4082732 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 654582 |
End bp | 656405 |
Gene Length | 1824 bp |
Protein Length | 607 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 638009001 |
Product | cobalt chelatase, CobT subunit |
Protein accession | YP_615696 |
Protein GI | 103486135 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG4547] Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) |
TIGRFAM ID | [TIGR01651] cobaltochelatase, CobT subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 7 |
Fosmid unclonability p-value | 0.0619466 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGTCCGCCC AATCCCCCCT CGACGATTTC AAGGCCGCGC TGTCGAGCGT CGCGCGCGCG GTGACGCGCG ACGCCGAGGT CGAGGTGGGC TTTACCGCCG ACGCGCCCGC GCAGGTGGGC AAGGCGATCA AGGTGCCGAC CCCGTCGCGC ACCCTGCCCG CCGATCAGGT CGCCGAAGCG CGTGGTTTCG CGGACTCCTA TGCTTTGCGG ATGAAGCATC ACAGCGAGAA ACTGCACGCC GCAGCGCGCC CCGCCGATCC CGTTGCCGCC GCCGCCTTCG ACGCGATGGA GCGCGCGCGG ATCGAGGCGC TGGGCGCGCG GCATATGGCG GGGATGCGCG GCAATCTGGC CGCCAGCCTC GCGATGCGGA TGCGCTCGGA CCCGATCAGC CGCGCGCAGG ACCGGGGCGA CGTGCCGATG TCGAGCGCGC TCGAACTGAT GCTGCGCGAA GCGCTGACCG GCGAACGCGC GCCGCAGGGG ACCGAGACCG GCCTGTCGCT GGTGCGCGAA TGGATCAGCA AGGAGGCGGG CGGCGATTTG ACCGCGCTGT CGATGCTGCT CGACGATCAG GCCGCGTTCG CCGAAACCGC GAAAATCGCG CTCCGCCACC TCGACCTCAT CCAGAGCGAC GAGCCGCTGG AACAAGGCGC CGAGGACGGC GGCGAAGAGG ATCAGACCGA AGCCGAAGAA AGTCAGGAAG AGCAGGAAAG CGAAGACGGC GGTGCCGGCG AAAGCCAGGT CGACGCGCGC GCCGAAATGG CGGGCGATCA GGCCGACGAC GGCGACAGCG ACCCCGACGC GCAGGAGATG GAGGCCGACG GCGAACCCGA AATGGGCGGC GAAGGCGACG AGGGGATGCT GCCCGTCCGC CCCAACCGCC TGCCGGGCGA CATTCCCGAT TTCAATTACC TCCGCTTCAC CGAAAAGCAT GACGAGATCA TCGCCGCGAC CGAGCTGTGC GACGCCGACG AACTCGCCCG CCTGCGCGCC TATCTCGACC AGCAGATGAC GCATCTGCAG GGCGCGGTGA CCAAGCTCGC CAACCGGCTC CAGCGCCGCC TGATGGCGCA GCAGAACCGC GCGTGGGATT TCGATCAGGA GGAGGGCCAG CTCGACGCCG CGCGGCTCGC GCGCGTCATC GTCTCGCCCG GCCAGTCCTT GAGCTACAAG ATCGAGCGTG ACACCGACTT CCGCGACACC GTCGTCTCGC TGCTCATCGA CAATAGCGGG TCGATGCGCG GACGCCCGAT CAGCATCGCC GCGATCAGCG CCGACATCCT CGCGCGCACG CTCGAACGCT GCGGCGTCAA GACCGAGATA TTGGGCTTCA CCACGCGCAC ATGGAAGGGC GGGCAGAGCC GCGAGGACTG GCTCGCCGCG GGTCGCCCCG CGCACCCCGG CCGCCTCAAC GACCTCCGCC ACATCATCTA CAAGCCCGCC GACGAACCCT ATCGCCGCGC GCGCAAGTCG CTGGGGCTGA TGATGCGCGA GGGGCTGCTC AAGGAAAATA TCGACGGCGA GGCGCTGATG TGGGCGCACA GCCGCATCAT CGCCCGCCCC GAGGAACGCC GCATCCTGAT GGTGATTTCG GACGGCGCGC CGGTCGACGA CAGCACCTTG TCGGTCAACC ACGGCGCCTA TCTGGACCAG CACCTGCGCC AGGTCATCGA CTGGATCGAA AACCGCTCGC CCGTCGAACT CTGCGCGATC GGCATCGGCC ACGACGTGAC GCGCTACTAC AGCCGCGCGG TAACGATCAT GGATGCCGAG CAATTGGGCG GCACGATGGT CGAACAGCTG GCGGGGTTGT TCGACGTGGA TTGA
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Protein sequence | MSAQSPLDDF KAALSSVARA VTRDAEVEVG FTADAPAQVG KAIKVPTPSR TLPADQVAEA RGFADSYALR MKHHSEKLHA AARPADPVAA AAFDAMERAR IEALGARHMA GMRGNLAASL AMRMRSDPIS RAQDRGDVPM SSALELMLRE ALTGERAPQG TETGLSLVRE WISKEAGGDL TALSMLLDDQ AAFAETAKIA LRHLDLIQSD EPLEQGAEDG GEEDQTEAEE SQEEQESEDG GAGESQVDAR AEMAGDQADD GDSDPDAQEM EADGEPEMGG EGDEGMLPVR PNRLPGDIPD FNYLRFTEKH DEIIAATELC DADELARLRA YLDQQMTHLQ GAVTKLANRL QRRLMAQQNR AWDFDQEEGQ LDAARLARVI VSPGQSLSYK IERDTDFRDT VVSLLIDNSG SMRGRPISIA AISADILART LERCGVKTEI LGFTTRTWKG GQSREDWLAA GRPAHPGRLN DLRHIIYKPA DEPYRRARKS LGLMMREGLL KENIDGEALM WAHSRIIARP EERRILMVIS DGAPVDDSTL SVNHGAYLDQ HLRQVIDWIE NRSPVELCAI GIGHDVTRYY SRAVTIMDAE QLGGTMVEQL AGLFDVD
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