Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0616 |
Symbol | |
ID | 4082552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 626996 |
End bp | 628582 |
Gene Length | 1587 bp |
Protein Length | 528 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 638008975 |
Product | D-3-phosphoglycerate dehydrogenase |
Protein accession | YP_615670 |
Protein GI | 103486109 |
COG category | [E] Amino acid transport and metabolism [H] Coenzyme transport and metabolism |
COG ID | [COG0111] Phosphoglycerate dehydrogenase and related dehydrogenases |
TIGRFAM ID | [TIGR01327] D-3-phosphoglycerate dehydrogenase |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.640549 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACCCAAC CCAAAGTCCT TATCAGCGAC AAGATGGACC CCAAGGCCGC CGCAATCTTC AAGGAACGCG GTATCCGCGT CGACGAAATC ACCGGCAAAA CCAGGGACGA GCTGATCGCG ATGATCGGCG ACTACGACGG CCTTGCGATC CGGTCCGCCA CGAAAGTCAC CGCCGACGTC CTTGCCGCCG CGACAAAGCT GAAGGTCGTC GGCCGGGCCG GGATCGGCGT CGACAATATC GACATTCCGG AGGCGTCGAA AAAGGGCGTC GTCGTGATGA ACACGCCCTT CGGCAATTCG ATCACCACCG CCGAACATGC GATCGCGATG ATGTTCGCTC TCGCGCGCCA GATTCCCGAA GCCAATGCGC TGACGCAGGC GGGCAAATGG CCGAAGAACG ACTTCATGGG CGTCGAGCTG ACGTCGAAGA CGCTCGGCCT GATCGGCTGC GGCAACATCG GCAGCATCGT CGCCGAACGC GCGCTCGGCC TCAAGATGAA GGTTGTCGCC TTCGACCCCT TCCTGACCCC CGAACGCGCG ATCGAGCTGG GCGTCGAGAA GGTCGACCTC GACACTTTGC TCGCGCGCGC CGACTTCATC ACGCTGCACA CGCCGCTGAC CGATCAGACG CGCAATGTGC TGTCGAAGGA AAATCTCGCC AAAACCAGGA AGGGCGTGCG GATCATCAAT TGCGCGCGCG GCGGGCTGAT CGACGAAGCG GCGCTGAAGG ACGCGCTCGA CAGCGGCCAT GTCGCCGGCG CGGCGCTCGA CGTGTTCGCG GTCGAGCCAC CGCCGGCGGA CCATCCGCTG TTCAACACCC CCAATTTCAT CTGCACCCCG CATCTTGGCG CGTCGACCGA CGAGGCGCAG GTCAATGTCG CGATCCAGGT CGCCGAACAG ATCAGCGATT ATCTGCTCAC CGGCGGCATA ACCAATGCGC TGAACGTCCC CAGCCTGTCG GCCGAGGAAG CGCCGAAGCT GCGCCCCTAT ATGAGCCTCG CCGAAAAGCT CGGCAGCCTC GTCGGCCAGC TTGCGCACGA CAATCTGACG CACATCTCGG TCGAGGTCGA GGGTGCAGCG GCCGAACTCA ACCTGAAACC GATCGTCGCT GCGGTGCTCA CCGGGCTGAT GCGCCGCTAT TCGGACAGCG TGAACATGGT CAACGCGCCG CATCTCGCGC GCGAACGCGG CCTCGATGTG CGCGAAGTGC GCCACGACCG CGAAGGCGAT TATCACACGC TCGTCCGCGT GACCGTGGCG ACCGAGGCGG GCGACCGTTC GGTGGCGGGC ACGCTGTTCG GCAACAACGA GCCGCGCCTC GTCGAAATGT TCGGCATCAA GGTCGAAGCC GACCTCGACG GCGACATGCT CTATATCGTC AACGAGGACG CGCCGGGCTT CATCGGCCGC ATCGGCAGCA CGCTGGGCGA CGCCGGACTC AACATCGGCA CCTTCCACCT CGGCCGCCGC GCCGCGGGCG GCGAAGCGGT GCTGCTGCTC AGCCTCGATT CGCCGATGCC CGAACCGCTG TTGTGGCAAG TTTGCCAGCT TCCCGGCGTG AAGATGGTGA AGGGTCTGAA GTTCTGA
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Protein sequence | MTQPKVLISD KMDPKAAAIF KERGIRVDEI TGKTRDELIA MIGDYDGLAI RSATKVTADV LAAATKLKVV GRAGIGVDNI DIPEASKKGV VVMNTPFGNS ITTAEHAIAM MFALARQIPE ANALTQAGKW PKNDFMGVEL TSKTLGLIGC GNIGSIVAER ALGLKMKVVA FDPFLTPERA IELGVEKVDL DTLLARADFI TLHTPLTDQT RNVLSKENLA KTRKGVRIIN CARGGLIDEA ALKDALDSGH VAGAALDVFA VEPPPADHPL FNTPNFICTP HLGASTDEAQ VNVAIQVAEQ ISDYLLTGGI TNALNVPSLS AEEAPKLRPY MSLAEKLGSL VGQLAHDNLT HISVEVEGAA AELNLKPIVA AVLTGLMRRY SDSVNMVNAP HLARERGLDV REVRHDREGD YHTLVRVTVA TEAGDRSVAG TLFGNNEPRL VEMFGIKVEA DLDGDMLYIV NEDAPGFIGR IGSTLGDAGL NIGTFHLGRR AAGGEAVLLL SLDSPMPEPL LWQVCQLPGV KMVKGLKF
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