Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0565 |
Symbol | |
ID | 4081455 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | - |
Start bp | 578579 |
End bp | 579637 |
Gene Length | 1059 bp |
Protein Length | 352 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638008923 |
Product | DNA-directed RNA polymerase subunit alpha |
Protein accession | YP_615619 |
Protein GI | 103486058 |
COG category | [K] Transcription |
COG ID | [COG0202] DNA-directed RNA polymerase, alpha subunit/40 kD subunit |
TIGRFAM ID | [TIGR02027] DNA-directed RNA polymerase, alpha subunit, bacterial and chloroplast-type |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.548762 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.672721 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGACTGTCA ACATCCGGAA CTGGCAGGAA TTGAAGAAGC CCAGCAACCT GGAAATCAAG ACCGGCGGCG ACGGCAAGCG CAAGGCGACC TTCGTTGCCG AACCGCTCGA GCGCGGTTTC GGCCTGACGC TGGGTAACGC GCTGCGCCGC GTGCTGCTCT CGTCGCTCCA GGGCGCGGCG ATCACCTCGA TCAAGATCGA AAATGTGCTG CACGAGTTTT CGAGCCTTGC CGGTGTGCGC GAAGACGTCA CCGACATCGT CCTGAACGTC AAGCAGATCG CGCTCAAGAT GGAGGGCGAA GGGCCGAAGC GGCTCCAGCT TTCGGCGACG GGCCCGGCGA CGGTCAAGGC GGGCGACATC ATGGTGTCGG GCGACATCAA GGTGATGAAC CCGAACCATG TCATCTGCCA TCTCGACGAA GGCGCGACGC TCAACATGGA GCTCGTCGCC GACACCGGCA AAGGCTATGT CCCCGCGACC GCCAACCGCC CGGCCGATGC GCCGATCGGC CTGATCCCGG TCGACTCGCT CTATTCGCCG GTGCGCCAGG TCGCCTACAA GGTCGACAAT GCCCGCATCG GGCAGGAACT GGACTATGAC AAGCTGAACC TGACCGTCGA AACCGACGGC ACGGTGACGC CCGAAGATGC TGTCGCTTAC GCCGCACGCA TCCTGCAGGA TCAGCTCCAG GTCTTCGTCC ACTTCGAAGA AGCGATGAGC GACAGCGGCC TGATCGGCAT GGCGGCCCCC TCGGCCGCCA GCGACGAGTC CGACGTCAAC CAGCTCAACC GCTTCCTGCT CAAGAAGGTC GACGAGCTTG AACTGTCGGT CCGCTCGGCC AACTGCCTGA AGAACGACAA CATCATCTAT ATCGGTGACC TCGTTCAAAA GACCGAAGCC GAAATGCTCC GCACGCCGAA CTTCGGCCGC AAGTCCTTGA ACGAAATCAA GGAAGTGCTG TCGTCGATGG GCCTGCGTCT GGGCATGGAC ATCCCCGGCT GGCCACCCGA GAATATCGAG GAAATGGCCA AGAAGCTGGA GCAGGAGCTG CTGGGTTAA
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Protein sequence | MTVNIRNWQE LKKPSNLEIK TGGDGKRKAT FVAEPLERGF GLTLGNALRR VLLSSLQGAA ITSIKIENVL HEFSSLAGVR EDVTDIVLNV KQIALKMEGE GPKRLQLSAT GPATVKAGDI MVSGDIKVMN PNHVICHLDE GATLNMELVA DTGKGYVPAT ANRPADAPIG LIPVDSLYSP VRQVAYKVDN ARIGQELDYD KLNLTVETDG TVTPEDAVAY AARILQDQLQ VFVHFEEAMS DSGLIGMAAP SAASDESDVN QLNRFLLKKV DELELSVRSA NCLKNDNIIY IGDLVQKTEA EMLRTPNFGR KSLNEIKEVL SSMGLRLGMD IPGWPPENIE EMAKKLEQEL LG
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