Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Sala_0541 |
Symbol | |
ID | 4081431 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sphingopyxis alaskensis RB2256 |
Kingdom | Bacteria |
Replicon accession | NC_008048 |
Strand | + |
Start bp | 554649 |
End bp | 555605 |
Gene Length | 957 bp |
Protein Length | 318 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 638008899 |
Product | tRNA pseudouridine synthase B |
Protein accession | YP_615595 |
Protein GI | 103486034 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0130] Pseudouridine synthase |
TIGRFAM ID | [TIGR00431] tRNA pseudouridine 55 synthase |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 0.578827 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 9 |
Fosmid unclonability p-value | 0.242004 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACGGCT GGATCATCCT CGACAAACCC GTGGGGCTGG GCTCGACGCA GGCGGTCGGC GCGGTCAAGC GCGTGTGCCG CGAGGCGGGG CTGGGCAAGG CCAAGGTCGG CCACGGCGGG ACGCTCGACC CGCTGGCGTC GGGCGTTCTG CCGATCGCGC TCGGCGAGGC GACAAAGCTC TGCGGGCGGA TGCTCGATGC CAGCAAGACC TATGATTTTA CAGTGCGGTT TGGGATGGAA ACCGCGGGGC TCGATGCCGA GGGTGAGGTG GTGGCGACGA GCGACGTGCG GCCGACGCTG GCGGAGATTG ATGCGGTGTT GCCGCGCTTT ACCGGACCGA TCGAGCAGGT GCCGCCGGCT TACTCCGCAA TAAAGATCGA TGGCGAGCGG GCGTATGATC GCGCGCGCAA GGGTGAGGCG GTTGAGATGA AGGCGCGGGG GGTGACCGTC TATTCCCTTC GTCATGCCGG ACTTGATCCG GCATCTATCG CCGCGGGCGC CGAATGGACC CCGGATCAAG TCCGGGGTGA CGAGGGCGGG GAGGATCGGC TTGAATCCAT CACACTTACC GCCCATGTTT CCAAGGGCAC ATATATCCGC TCGCTCGCCC GCGACATCGC GCGCGCGGTC GGCAGCGTCG GCCATGTCAC CATGCTCCGC CGTACGAAAG CCGGGCCGTT CACGCTCGAA CGCGCGATTT CGCTGGACAA ATTGAACGCT TTCGGCCAAG GCGCCGCGCA ATCAGAGATT ATTCTGCCGC TCGAGGCAGG GCTGGTCGAC ATCCCGGCTC TTGACCTTTC CCCGGAAGCG GCAGGGGCGA TCCGCCAGGG TCGCGTCTGG ACCGGGGTTA GCACGCACGA CGGGCTCTAT TGGGGACGCG ACGCCGAGAA CCGGCCCGTT GCCTTGATCG AGGCTTTGGC GGGAACGCTG AAGGTAGTGC GGGGCTTCAA CCTGTAA
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Protein sequence | MNGWIILDKP VGLGSTQAVG AVKRVCREAG LGKAKVGHGG TLDPLASGVL PIALGEATKL CGRMLDASKT YDFTVRFGME TAGLDAEGEV VATSDVRPTL AEIDAVLPRF TGPIEQVPPA YSAIKIDGER AYDRARKGEA VEMKARGVTV YSLRHAGLDP ASIAAGAEWT PDQVRGDEGG EDRLESITLT AHVSKGTYIR SLARDIARAV GSVGHVTMLR RTKAGPFTLE RAISLDKLNA FGQGAAQSEI ILPLEAGLVD IPALDLSPEA AGAIRQGRVW TGVSTHDGLY WGRDAENRPV ALIEALAGTL KVVRGFNL
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