| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0466 |
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| Symbol | |
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| ID | 4080955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | + |
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| Start bp | 477662 |
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| End bp | 480298 |
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| Gene Length | 2637 bp |
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| Protein Length | 878 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638008824 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_615520 |
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| Protein GI | 103485959 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.373706 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGGGGGTTC GGCGTAACAT CATCCGGTCG TCGCGCGATG ATTTTGCGGT GCACGAATCG
CCGTTCGATT CACCCGAGTT CGTCGCGCAA CTGCTGCGCG TCGCGACACT GTGGCATTAT
GTGCTGATCG GGCGGCTGCT GGCGTTCGCG GTCTTTTCCG TCCTGCCGGG CGTTGCCGGC
TTTTTCGACC AGCCTTCGCT ATGGCTGACG ATGGCCAGTG GACTGATGTG CGACGCTGCG
CTGACGGTGA TGGGGCAGGC GATGCGCAGG CCCCGCCCCG CCCTCGCCGC CCGCGCACGG
CAGGTCGCGA TGCTCTCGGC GGCGCTCGTC GCGCTTGGCA CCCTGTTCAA TGCGGCGGCG
ATGTTCGCGG CGATCGCGAT GCCCGACGGC GGCCGCCATT TCGATGCCTT TACGGCGATC
CAGATCGGGT CGTTGCTCGT CGCCGCCTCG GCCGTGTCGA TCGTCCGGCC GCTCTTCTTC
AGCTTTTCCG GGGCGGTGGC TTTCGGCGGG GCACTCGGGG TCGCATCCTG GCCCTTTGCG
CTGGCAGGCG CGGTCTTTCT TGCGCTGCTC ATCGTGATGA TGCGCGAGGA TGTCCGCCAC
CAGCGGCGTG CGACTGCGGC GGCGCGCCGC GCGATCAGCG AGCAGCAGCG CGCGCTCAAC
CTGATGCGCG ATTTTGAACG CGCCGGACGT GGCTGGTTCT GGGAGACAGA TCGTGACGGC
CAGCTCGTCT ATATCTCGCC GACGGTTGCG GCGCGGCTCG GGCGCCCGCT CGCCGAGCTG
ATCGGGCGGC CCTTTACGGA CATCATTCGC AAACGCATCG GCAATGACGA AAGCGAAGAG
CGGACGCTGG GGTTCAGCCT GTCGTCGCGC ACGCCGTTCA AGGAGCTGAC GGTGCAGGCG
GCGGCTCCGG GCGAGGAGCG CTGGTGGTCG ATATCGGGTC ATCCGATCAG CAATGCTCTT
GGCCATTTTC AGGGATTTCG CGGCAGCGGC ACCGACCTGA CCGACCAGAA ACGGTCAGAG
CGCGAGATCA ACCAGCTCGC GCGCTATGAC ACGCTCACGG GCCTTGCCAA CCGGCGTCAC
ATAACCGACC TGCTCGAGCG TGCGCTTCGC ACGCATATCG GTCAGCCGCA GCCTTGTGCG
CTGCTGCTGA TGGACCTTGA CCGGTTCAAG GCGGTGAACG ACACGCTCGG CCACCCGGTC
GGCGACCAGC TGTTGCAGCA GGTCGCAGGG CGGCTGACGC AGATCGTCGG CGACAAGGGA
CAGGTCGGTC GCCTGGGCGG CGACGAGTTC CAGATCGTGC TGCCGCAGCT GAACCACCCC
GAAAAGATCG CCGGCATCGC CAACGCGATC ATCCTGAGCC TCGCCAAACC CTTTGCCATC
GAGGGCGAAC AGGTACGGAT CGGTTCGTCG ATCGGCATCG CGGTGTCGGA CGGCGAGGGG
GTGAGTGCGT CGGCGCTGGT GCGCAACGCC GACCTTGCGC TCTATGCCGC CAAGGACGCG
GGGCGGGGCG TATATCGCTT CTATGCCGAC GCGATGCACA ATCAGGCGAG CGAGCGCAAG
GCGATCGAGG ATGCGCTGCG CGACGCGCTG GCGAAGGACG AGTTGCGGCT TCTCTATCAG
CCAATCGTCG ATGTCGCGAC CGAACGGATT TCGGGGTTCG AGGCGCTGAT CCGCTGGAAC
CATGCGACCG CAGGAACGAT CAGTCCCGAA AAGTTCATCC CGATCGCCGA AGAATCGAAC
CTGATTGTCC CGATCGGCGA ATGGATCATC CGTACCGCCT GCGCGGCGAT CGCGACGCTG
GGATCCGGCT ATCGGGTCGC GGTCAATGTC TCGCCGCGCC AGTTCGCGAA CGAGGCGCTG
CCCGCCACGA TCCTGAGCGC GGTGTCGGGC GCCGGCATTC GCCCCGAACA GCTGGAGCTT
GAGATTACCG AAGGTGTCTT CCTCGATGAA AGCGCCGAAA ATCTGGCGAT GTTCCGGAAG
CTGAAACGCA CCGGCGTTCG CCTTGCGCTT GACGATTTCG GCACCGGCTA TTCGGCGCTC
GGCTATCTGA AGAAGGCGCC GTTCGACAAG ATCAAGATCG ACCAGAGCTT CGTTCTTGGA
GCCGCGGACA AGAGCAGCAT GAACGCTGCG ATCATCGCGT CGATCGTCGG GCTGGCCAGC
GCGCTCGACA TGGAAACAAC CGCCGAGGGG GTCGAAACGC ACGACGATCT CGCGCTGGTC
CGCAGCCTCG GGTGCAGTCA CGTCCAGGGT TATATCTATG GCCAGCCGAT GCAGTTGGCC
GAAGTGGTCG GGTTGCTGCG CGCCGGCGGC GGGCGGGTCG AAGCCAGGGG ATACCGAAGC
GCGCGCGCGC CGCGGCTCAC CGTTTTTCGT ACGATCCACG TCGACAGTGG CGGCTATCGC
TATGAAGCGA TCCTGCGCAA CATCGCGCCA GGCGGCGCGC TGGTCGAGGG GCTGTGGAAC
GTCCCACCGG GAACCCGACT GACGCTGGAG TTCGGCCGGG GTCTCCGCGT CGACGCCGAG
GCGCGATGGT CGGCGGATAA CCGAACCGGG GTCCAGTTCT CCGCCGCGGT TGATATCGAA
GAGCTGATCG GCGCACGCGT CGCGCCACCG CGGGGTCGCC CGCGCCGCGC CGCGTAA
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| Protein sequence | MGVRRNIIRS SRDDFAVHES PFDSPEFVAQ LLRVATLWHY VLIGRLLAFA VFSVLPGVAG
FFDQPSLWLT MASGLMCDAA LTVMGQAMRR PRPALAARAR QVAMLSAALV ALGTLFNAAA
MFAAIAMPDG GRHFDAFTAI QIGSLLVAAS AVSIVRPLFF SFSGAVAFGG ALGVASWPFA
LAGAVFLALL IVMMREDVRH QRRATAAARR AISEQQRALN LMRDFERAGR GWFWETDRDG
QLVYISPTVA ARLGRPLAEL IGRPFTDIIR KRIGNDESEE RTLGFSLSSR TPFKELTVQA
AAPGEERWWS ISGHPISNAL GHFQGFRGSG TDLTDQKRSE REINQLARYD TLTGLANRRH
ITDLLERALR THIGQPQPCA LLLMDLDRFK AVNDTLGHPV GDQLLQQVAG RLTQIVGDKG
QVGRLGGDEF QIVLPQLNHP EKIAGIANAI ILSLAKPFAI EGEQVRIGSS IGIAVSDGEG
VSASALVRNA DLALYAAKDA GRGVYRFYAD AMHNQASERK AIEDALRDAL AKDELRLLYQ
PIVDVATERI SGFEALIRWN HATAGTISPE KFIPIAEESN LIVPIGEWII RTACAAIATL
GSGYRVAVNV SPRQFANEAL PATILSAVSG AGIRPEQLEL EITEGVFLDE SAENLAMFRK
LKRTGVRLAL DDFGTGYSAL GYLKKAPFDK IKIDQSFVLG AADKSSMNAA IIASIVGLAS
ALDMETTAEG VETHDDLALV RSLGCSHVQG YIYGQPMQLA EVVGLLRAGG GRVEARGYRS
ARAPRLTVFR TIHVDSGGYR YEAILRNIAP GGALVEGLWN VPPGTRLTLE FGRGLRVDAE
ARWSADNRTG VQFSAAVDIE ELIGARVAPP RGRPRRAA
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