| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0382 |
|---|
| Symbol | |
|---|
| ID | 4081969 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Sphingopyxis alaskensis RB2256 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008048 |
|---|
| Strand | + |
|---|
| Start bp | 394545 |
|---|
| End bp | 395678 |
|---|
| Gene Length | 1134 bp |
|---|
| Protein Length | 377 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638008741 |
|---|
| Product | peptidase S1 and S6, chymotrypsin/Hap |
|---|
| Protein accession | YP_615438 |
|---|
| Protein GI | 103485877 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.34875 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGAT CCCCTAACCT CAAGGTATCG AAGTCAAAAA CCTACTTCGA ACTCCTTATC
ATCATGAACG TCCTTCTTCT TGCCGCTTCA GCAGCCCTCT TGATCAACCA GTCCGCTCCG
GTCGCCGAAC CACGCGTCGT CACTGCGCGA GGCGATCTTG GCGCAGATGA ACGTGCGACA
ATCGACCTGT TCCGGAACGC ACGCGAGTCC GTCGTCTTCA TATCGACACG GCAGCGGGTG
GCCGATTTCT GGACACGCAA TGTCTATAGC GTGCCGCGCG GTTCCGGCTC GGGTCTCGTA
TGGGACGAGG CCGGCCATAT TGTCACAAAT TTCCATGTCA TCGAGGGCGC CTCCGAAGCG
CAAATCCAGC TTGCTGACGG TCGCCAGTTT TCCGCCACGC TGGTCGGTGT TAGCCCACAA
CACGATCTTG CTGTCCTGAA AATAGGCGGT GCGGGCTTCA CTGCGCCCGC GCGGGTGCCA
ATCGGCACGA GCATCGATCT GCAGGTGGGG CAGAATGTCT TCGCAATTGG AAACCCGTTC
GGCCTAGACT GGACCCTGAC CAAGGGGATT GTTTCGGCGC TGGATCGTTC GCTGCCGAAT
GAAAATGGCC CCGACATTCG GCACCTCATC CAGACCGATG CCGCCATCAA TCCAGGCAAT
TCGGGTGGTC CGCTGCTCGA TTCCGCAGGC AGACTGATCG GGATCAATAC CGCAATCTAT
AGTCCCTCCG GGGCATCGGC AGGAATCGGC TTTGCCGTGC CGGTTGATAC GGTCATGCGG
GTCGTGCCGC AGCTCATTTC GGAAGGGCGC TATACGCGGC CCAGCCTTGG CTTTGAAAGC
GATGACGATA TAAACGATCG GCTCAAACGC GCTTCGGGGA TCGAAGGGGT TTTCGTCCTG
CGGGTGGATC CCGGGTCCTC GGCGGATCGC GCCGGTCTGG TTGCTGCGCA GCGTACGAGG
CGCGGTGTCG CTCCTGGAGA CATCGTTACC GCTCTGAACG GCAAACCCGT TTCCAGAGTC
GGCGATCTGC TCGCCCGACT AGACGATTTT CGGGTCGGAC AAAGCGTCGA ACTTACGCTG
ATGCGCGGCG GCGAAGAGCG AATGGTCAGG CTCGAACTCG AACCGGGAAG CTGA
|
|---|
| Protein sequence | MDRSPNLKVS KSKTYFELLI IMNVLLLAAS AALLINQSAP VAEPRVVTAR GDLGADERAT
IDLFRNARES VVFISTRQRV ADFWTRNVYS VPRGSGSGLV WDEAGHIVTN FHVIEGASEA
QIQLADGRQF SATLVGVSPQ HDLAVLKIGG AGFTAPARVP IGTSIDLQVG QNVFAIGNPF
GLDWTLTKGI VSALDRSLPN ENGPDIRHLI QTDAAINPGN SGGPLLDSAG RLIGINTAIY
SPSGASAGIG FAVPVDTVMR VVPQLISEGR YTRPSLGFES DDDINDRLKR ASGIEGVFVL
RVDPGSSADR AGLVAAQRTR RGVAPGDIVT ALNGKPVSRV GDLLARLDDF RVGQSVELTL
MRGGEERMVR LELEPGS
|
|---|
| |