| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0158 |
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| Symbol | |
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| ID | 4082916 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 155860 |
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| End bp | 158835 |
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| Gene Length | 2976 bp |
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| Protein Length | 991 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 638008517 |
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| Product | helicase |
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| Protein accession | YP_615215 |
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| Protein GI | 103485654 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG3893] Inactivated superfamily I helicase |
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| TIGRFAM ID | [TIGR02786] double-strand break repair protein AddB, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.233932 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.795485 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGACAC GCCGCCCCAC CCTCTTTTCC ATTCCCGTCC AGCGGGCGTT CGCCGACGCG
CTCGCCGCCG GACTGATCGA CCGCTATGCG GACGGGGTGC TGGGGCTGAC CGAGGGGATC
GTGCTGCTGC CGAGCAATCG CGCGCGCAGC GCGGTTCAGG CCGCCTTCGT GCGCGCGGGC
GGCGCAGGAC TGCTGATGCC GCGGCTTGCG GTGATCGGCG ACGCCGATCT CGACGAAAAT
GTCGCGCTCG CGCTCGATGC GGTCGACATG GACGCGCCAC TGCCGCCGGC GATCGAGCCG
CTGCGGCGGC GCCTGCTGCT CGCCGAACTG ATCGAGCGAT ATACGCCCGC GGGAGAGCCA
CCGGTGACGG GTGCCGCCGC CTTTCAGCTC GCGGGCGGCC TCGCGCGCGT CATCGACCAG
CTGCATTATG AGGAAATCCC GGCCGCGGCA CTCGTCGATC TCGACCTCGG CGCCTTTGCC
GACCATTGGC GCGCGTCGCT GGCGCGGCTG CGCCTGCTCG TCGACCATTG GCCGGATGTG
CTCGCGGCGA CGGGCCACAT CGACCGCGCG GCGCGCCGCA ACGCGCTGCT CGACCGCGTG
GCCGCCGCCT GGCGGACGGC GGCGCCCGCG CGCTTCGTCG TCGCAGCGGG CATTACCACC
GCGGCGCCCG CGATCGCGCG ACTGCTGCGC ACCGTCGCCG ATATGGAACG CGGCATGGTC
GTGCTTCCCG GCCTCGACAC CGCGATGGCG ACGGCGGAAT GGGAGGCGCT GGGCCCGACC
GGACCTGACC CCGACCGTTC GGCGCGCCCG CTGGAAACAC ATCCCCAATA TCATCTGAAA
CTGTTGCTCG ATCGCATGGG CATCGCGCGC GAAGAGGTTG CCGAATGGGA GGCGCGCTCG
CCCTTCGACG GCCCGGAGGC GCGCTCGCGC TTCGTGTCGT TGCTCTTCGC GCCCGCCGAC
TATACCGCGC GGTGGCAGGC GGCGGGCGAT CTTGAGGCCG CGACCGCCGG GATCGCGGGC
GCGACCTTTG CCGACGATGC GCAGGAGGCC CAGGGGATCG CGCTGCTGAT GCGCCATGCG
GTCGAGACGC CGGGGCGCAC GGCAGCGCTG GTCACGCCCG ACCGCGCGCT CGCCGAGCGC
ATCGCCGCCG CGCTTGCGCG CTGGGGGATC GCCGTCGACG ACAGCGCGGG CCAGCCGCTG
GCGCGCACGC CGCCGGGCGC GCTTGCAATG CTGCTCGCGG AACTGGCGGC CGATTTCAAC
CCGGTCGCGC TGATCGCGCT GCTGGCGCAC CCGCTCGTCC GCAGGGGCGA GCCGCGCACC
GCCTGGCTCG ATGCGGTGCG CCAGCTCGAC CTGCTGCTGC GCGAACCGGG GCTTGCGCCC
GGCTGGGCGG GCGTGTCGGC GCGGATCGCC GCGCTCGCTG CCGATCGCGA CGCGCGCGGC
CATGCGCTCG CGGTCGAACT GGCGCCATGG TGGCACCAGT TGGGGGAGGC GTTCGTCCCC
CTGCTCGCGC CCTTCGCCGG GCCGCCGGTG GCGCCCGACC GCCTGCTCGC CGCGCTTCGG
CAGGGGCTCG AATGGCTGAC CGGCGAGGCG GCGTGGACAG GACCGGCGGG ACGGATGCTC
GCCGAGCTGT TCGACCGCTG GACACTCGCG CGCGGCGCGG GCCCGGCGCG CGTCGCCCCC
GCCGATTTCC CGGCGATGCT CGGCCAGTTG CTCGGCGAAG CCAGCGTCCG GCCGCCCTAT
GGCGGACACC CGCGGCTGTT CATCTGGGGG CTGCTAGAGG CACGGTTGCA ACGCGCCGAC
CTGATGATCC TCGGCGGCCT CGACGAAGGG CGCTGGCCCG CGGCGACGCA GCCCGACCCT
TGGCTCGCGC CCGGAATCCG CCGCCTGATC GGCCTGCCCG CCACCGAACG GCAGCAGGGG
ATGGCCGCGC ACGACTTCGC CGGCGCGCTG GGCGCGGGCG AGATCGTCGT AACGCGCGCC
CTGCGCAGCG GCGGCGACCC GGCGGTGGCC TCGCGCTTCT GGCTGCGGCT GGCGGCGCTG
GCGGGTGATC TTCCCCAGCC CGCGTTGGAC GGCGTACCGC TGACCGATCT CGCCGCGCGC
ATCGACTTAC CGGCCGACGA CATCGAGCCC GCCGGCAAAC CCTGCCCCGC GCCGCCCGCC
GACCGGCGCC CGCGCCGGAT CAGCGTCACC GCGGTCGACC GGCTCGCGCG CGATCCCTTT
GCCTATTATG CGAACCAGAT TCTCGGCCTG TCGCCGCTCG CGCCGCTGAG CGCCGCGCCC
GATCCGCGCT GGCGCGGGAC GCGGGTGCAC GCGCTGTTCG AACGGTGGGT GCGCGCGGGA
GCGAACGCGG CGGCGTTCGA GGCCGAACTG GCGGCGCTGC GCGACGACCC GGCGCTCGAC
GCGATCGCGC GCGCTTTCTG GCTGCCGCGC ATCGAACCTG CGCTGCGCTG GGCGGCGCGA
CAGCTGATCG AGGCCGAAGG GCGCACCGCG CTGAGGGCCG AGGCGTGGGG TGAGATCGCG
CTCGACGGCA TCACCCTTAC CGGCAAGGCC GACCGCGTCG ACCGGCTGCG CGACGGACGC
CTCGCGATCG TCGATTACAA GACGGGCGGG GCGCCGAACG CGAAGGCGGC GTTCGACAAG
CTCGACAATC AGCTCGGCCT GCTCGGCCTG ATTGCCCGGC GGGGCGGGCT GGCGGGCGTC
GACGCGGCCG AAATCGCTGC CCTGGAGTAT TGGAGTCTGC GCCCCGACCG CAAAGCGGGC
GGCGCAGGCA AGATTTCGTC GACCTATGGC CCGCGCAGCG ACCTGAAAAG CGCCGCGGAA
GCGGTCGATC ACGCCGCCGA CGCGCTCGCC GGCCTGGCCG CGCGCTATCT GTTCGGCGAC
GCGCCCTTCG CGCCGGGCGA CAGCGCGACC TATGGCGATT ACGACCAGCT GATGCGCCGC
GACGAATGGT TCGGGCGCGG CGAGGAGGGC GCATGA
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| Protein sequence | MATRRPTLFS IPVQRAFADA LAAGLIDRYA DGVLGLTEGI VLLPSNRARS AVQAAFVRAG
GAGLLMPRLA VIGDADLDEN VALALDAVDM DAPLPPAIEP LRRRLLLAEL IERYTPAGEP
PVTGAAAFQL AGGLARVIDQ LHYEEIPAAA LVDLDLGAFA DHWRASLARL RLLVDHWPDV
LAATGHIDRA ARRNALLDRV AAAWRTAAPA RFVVAAGITT AAPAIARLLR TVADMERGMV
VLPGLDTAMA TAEWEALGPT GPDPDRSARP LETHPQYHLK LLLDRMGIAR EEVAEWEARS
PFDGPEARSR FVSLLFAPAD YTARWQAAGD LEAATAGIAG ATFADDAQEA QGIALLMRHA
VETPGRTAAL VTPDRALAER IAAALARWGI AVDDSAGQPL ARTPPGALAM LLAELAADFN
PVALIALLAH PLVRRGEPRT AWLDAVRQLD LLLREPGLAP GWAGVSARIA ALAADRDARG
HALAVELAPW WHQLGEAFVP LLAPFAGPPV APDRLLAALR QGLEWLTGEA AWTGPAGRML
AELFDRWTLA RGAGPARVAP ADFPAMLGQL LGEASVRPPY GGHPRLFIWG LLEARLQRAD
LMILGGLDEG RWPAATQPDP WLAPGIRRLI GLPATERQQG MAAHDFAGAL GAGEIVVTRA
LRSGGDPAVA SRFWLRLAAL AGDLPQPALD GVPLTDLAAR IDLPADDIEP AGKPCPAPPA
DRRPRRISVT AVDRLARDPF AYYANQILGL SPLAPLSAAP DPRWRGTRVH ALFERWVRAG
ANAAAFEAEL AALRDDPALD AIARAFWLPR IEPALRWAAR QLIEAEGRTA LRAEAWGEIA
LDGITLTGKA DRVDRLRDGR LAIVDYKTGG APNAKAAFDK LDNQLGLLGL IARRGGLAGV
DAAEIAALEY WSLRPDRKAG GAGKISSTYG PRSDLKSAAE AVDHAADALA GLAARYLFGD
APFAPGDSAT YGDYDQLMRR DEWFGRGEEG A
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