| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0157 |
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| Symbol | |
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| ID | 4081827 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 152363 |
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| End bp | 155863 |
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| Gene Length | 3501 bp |
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| Protein Length | 1166 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 638008516 |
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| Product | UvrD/REP helicase |
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| Protein accession | YP_615214 |
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| Protein GI | 103485653 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1074] ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains) |
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| TIGRFAM ID | [TIGR02784] double-strand break repair helicase AddA, alphaproteobacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.271961 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.551574 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCGTC CCGCGACCCT CGCGACGCTC GATCCGCACC AACGCGCCGC CGCTGATCCC
GCGCGCCATG TCTGGCTGGG GGCGTCGGCC GGCACAGGCA AGACGCAGGT GCTGTCGGCA
CGCGTGCTGC GTCTGCTGCT CGACGGCGTA TCGCCCGAAG CGATCCTGTG CATCACCTTC
ACCAAGGCGG GCGCCGCCGA AATGGCGCAC CGCATCCACC AACGGCTGGC GAAGTGGGTG
CGGATGGAAG ACGGCGAACT GCGGCTCGAC CTGCAGGCGC TGGGGATCGA CCTCGAACTT
CACGGTCATG ACGATGGCGT GCCCGCGCTG ATCGCGCGCG CCCGCGCCTT GTTCGCGACG
GTGATCGACA GCCCCGGCGG CGCGATCCGC GTCCAGACGA TTCACAGCTT CTGCCAGACC
TTGCTCGCGA GCTTTCCGCT TGAGGCGAAG CTGCTCCCCG GCTTTCGCGC GATCGAGGAA
GATGAGGCGG GCGCGCTTCA GCGGCGGGTG CTCGGCGACC TGCTCGACGC GCCGGACGAG
GAACAGGCGG CGCTGCGCGC AGCCGCCGCC GCGCTGGCGC AGCGGCTTGG CCCTGATGCC
GCGATCGGTT TTCTGTCGCG CTGCGCGTCG GTGTTCGGCG GGCCCGGTGC GCTGCTGCCC
CCCGCGGCGC ACGATCTGCG CGCCGCCTTC GGCCTGCCCG GCGGCGATCC CGATGCGTGG
ATGATCGACC AGCTTGCCGG GGGCGCGATC GCCGAGGCCG ATATCAAGGC GGTGGCGGCG
AGCGGCGCGG CGTGGGGGAC GAAGACCGGG CTTGCCTGTT CGGACGTGAT GGTCGGCTGG
ATGACGGGCG ATACGGCGGC GCGCGCGGCG ATGCTGGATG AGCTTCTTGG CTGCTTCCTG
ACCGGCAAAG GCGATTTGCG CGCCGATTTT GCGGGCGACA AGGGCCGGAT GACCGATTGC
GTCGACAGCG CGGTGCGGAT CGTCGAGGCG GCATCGGCGC TGCGCGGCAC CGCGACGGCG
ATGCGCATCG CCGACGAACT GGCGGCGGCG TGGAAGCTCG GCAGCCGCTT TGCCGAAGCC
TATGCGCTCG CCAAGCGCGA ACAGGGGCTG GCCGATTTCG ACGACCTCAT CACCTTGGCG
GGGTCGCTGC TGCGCGTCAG CGGCTTTGGC GAATGGGTGC GCTTCAAGCT CGACCAGCGC
ACCGACCATA TATTGGTCGA CGAGGCGCAG GATACGAACA TGCGCCAATG GGGGATCGTG
CTGTCGCTCG CCGAAGAGTT TTTCGCAGTG CATGGCAAGG ACATGGACCG GGCGCGGACG
CTGTTCACCG TCGGCGACCG CAAGCAGGCG ATCTTCGGCT TCCAGGGCAC CGAGCCCAGG
GCCTTTGTCG CCGCGCGCGA CCTGTTTCAT GCGCTCGGCG AGCGCGCGGG ACAGGATTTC
GAGGCGGTCG ACCTCATTTC CAACTATCGC TCGACCCCGG CGATACTCGA GGTCGCCGAC
GCCTGGCTTG CCGCGGGCGG CACCGCGCTG ATGGGGCTGG ACGGCGCGGA GCCGCCACAT
GTCCCGCACC GCCGGGCGCA CGCGGGGCAG GTCGAATTGT GGGAACCGCT GCCGGTCGGC
AAGGCGCTCG GCGCGACCGA GGAGGCCGAC GAAGGGGTCG ACGACAACGG CAACGCCACC
GCGCCCGCCC GCGATCCGGC GAGCATGCGC CTCGCAAAGG CGATCGCCGC CGAAGTGCAG
GACTGGATCG CCAACGGCAA GGATGGCCGC CCGGTGGCGC CCGGCGACGT GATGATCCTC
GTGCGCCGCC GCCGCGACCT TGCGGCGCGG ATCGTCGCGC GGCTGCAGGC GTTGCATGTT
CCGGTCGCGG GGGTCGACCG CTTCGCGTTG ACGCAGCCGC TCGCCGTGCA GGATCTGATG
GCGGCGATGC GCTTTGCGGT GCAACCGCAC GACGACCTCA ACCTCGCCGC GCTTCTCGTC
TCGCCGCTGA TCGGCTGGAC GCAGGACGAT CTCTATGATC GCACACGGGG CCGTGGCCGC
ACGCCCATCT GGATGTATCT GCGCGCACAT CAGGACATGA TGCCGCCTGC GACGATGGCG
ACACTGCGCC AGATTCTCGG CATGGCCGAT TATACGACGC CGTTCCGCTT CCTCGAAACC
CTCCTGTCGG GGCCGATCGA CGGGCGGCGC AAGCTTTACG CGCGGCTGGG GCGCGAGGCG
CGCGACCCGA TCGACGAACT GCTGAATCAG GCGCTGGCGT TCGAGGCCCG CAAAACCGTC
TCGCTGCTCG GTTTCCTGGC CGAGATAGAG GGCAGCGCCG CCGACATCAA GCGCCAGACC
GAGGCGCGCG GCGGCGTCGT GCGCGTGATG ACGGTGCATG GATCGAAGGG TTTGCAGGCG
CCAATCGTCA TCCTCGCCGA CGCCACCGAC GATGCGGCGT TCGGGCATCG CCCTTTCACC
GTGGATGTCG CCGCGTGGGA AAAGCTCCCG GTCTATGCAA TCGGCGCCGA CGAGCGGCAC
GGTGCGCTCG CCGACGCCTA TGCCAAAGCC AAGGCGGCGG CGGACGAGGA ACATTGGCGG
CTTTTCTATG TCGCGATGAC CCGCGCCGAG GAGATATTGG TGGTCGCCGG CGTCACCAGG
ACCGCCGAGC GCACCGTTCC CGAGGCGAGT TGGCATGCCG CGGTATCGGG TGTTCTCGAC
CGGCTGGGGC ACGACTGGGA GGATGGCGGC GCGGCCTGGG GACGGCGCCG CGTCCACCGC
GTCAACGCCG GACGCTGGGC ACCGCAGGCG AAGAAGGCGA AAACGGCGGC GCGGGCGCCG
ACCCGCCTGC CCGATTGGCT GCACCGCACG GCGCCCGAGG AAACCCGCCC GCCGCGACCG
CTCGCGCCCT CGACCCTCGG CGAGGACGAT GTCGCCGCGC CGCCGCAGGG AGGTGAGCGC
GGTGCGGCCG TCGAACGCGG ACTGTTGCTC CATGCGCTTT TCGAGCGGTT GCCGCCTGTC
GCCCCCGATC GCCGCCGCGC CGCGGCGCTG CGCTGGCTGG CGGTGCAGGC GCCGGCGCTG
GACGAGCCCG CGCGCGGAGC GATGGTCGAT GAAGTGCTGG CTGTCCTCGA CGATCCCGCG
CACGCGCCGC TCTTCGGGCC TGGATCGCTC GCCGAGGTGC CGCTCTCCGC GGTGGTCGAC
GGGGTGGTGG TCGCCGGGAT CGTCGACCGG CTACGCGTTA CCGATGACGC CGTGACCGTG
ATCGACTTCA AGACCGGCCG TCACCTTCCC GGCAGCGCTG CCGAGGTCCA GCCCGCCTAT
CTGCGCCAGA TGGCGGCCTA TCGCGATGCG CTGAAAGTGA TCTTTCCGGG GCGGCGGATT
GCGACCGCCC TGCTCTATAC CGCGGCGCCG CGGCTGATCG CGCTGGGTGA TGCGCTGCTC
GACGCGCACA AGCCGGGCTT GCTGGCAACC AAGGCGAATT TGCCGGGTTC GGCCCTTGAG
CCGGACGCGC CGACGCCTTA G
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| Protein sequence | MTRPATLATL DPHQRAAADP ARHVWLGASA GTGKTQVLSA RVLRLLLDGV SPEAILCITF
TKAGAAEMAH RIHQRLAKWV RMEDGELRLD LQALGIDLEL HGHDDGVPAL IARARALFAT
VIDSPGGAIR VQTIHSFCQT LLASFPLEAK LLPGFRAIEE DEAGALQRRV LGDLLDAPDE
EQAALRAAAA ALAQRLGPDA AIGFLSRCAS VFGGPGALLP PAAHDLRAAF GLPGGDPDAW
MIDQLAGGAI AEADIKAVAA SGAAWGTKTG LACSDVMVGW MTGDTAARAA MLDELLGCFL
TGKGDLRADF AGDKGRMTDC VDSAVRIVEA ASALRGTATA MRIADELAAA WKLGSRFAEA
YALAKREQGL ADFDDLITLA GSLLRVSGFG EWVRFKLDQR TDHILVDEAQ DTNMRQWGIV
LSLAEEFFAV HGKDMDRART LFTVGDRKQA IFGFQGTEPR AFVAARDLFH ALGERAGQDF
EAVDLISNYR STPAILEVAD AWLAAGGTAL MGLDGAEPPH VPHRRAHAGQ VELWEPLPVG
KALGATEEAD EGVDDNGNAT APARDPASMR LAKAIAAEVQ DWIANGKDGR PVAPGDVMIL
VRRRRDLAAR IVARLQALHV PVAGVDRFAL TQPLAVQDLM AAMRFAVQPH DDLNLAALLV
SPLIGWTQDD LYDRTRGRGR TPIWMYLRAH QDMMPPATMA TLRQILGMAD YTTPFRFLET
LLSGPIDGRR KLYARLGREA RDPIDELLNQ ALAFEARKTV SLLGFLAEIE GSAADIKRQT
EARGGVVRVM TVHGSKGLQA PIVILADATD DAAFGHRPFT VDVAAWEKLP VYAIGADERH
GALADAYAKA KAAADEEHWR LFYVAMTRAE EILVVAGVTR TAERTVPEAS WHAAVSGVLD
RLGHDWEDGG AAWGRRRVHR VNAGRWAPQA KKAKTAARAP TRLPDWLHRT APEETRPPRP
LAPSTLGEDD VAAPPQGGER GAAVERGLLL HALFERLPPV APDRRRAAAL RWLAVQAPAL
DEPARGAMVD EVLAVLDDPA HAPLFGPGSL AEVPLSAVVD GVVVAGIVDR LRVTDDAVTV
IDFKTGRHLP GSAAEVQPAY LRQMAAYRDA LKVIFPGRRI ATALLYTAAP RLIALGDALL
DAHKPGLLAT KANLPGSALE PDAPTP
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