Gene Sala_0084 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSala_0084 
Symbol 
ID4082059 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameSphingopyxis alaskensis RB2256 
KingdomBacteria 
Replicon accessionNC_008048 
Strand- 
Start bp89025 
End bp89618 
Gene Length594 bp 
Protein Length197 aa 
Translation table11 
GC content63% 
IMG OID638008445 
ProductTetR family transcriptional regulator 
Protein accessionYP_615143 
Protein GI103485582 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value0.382504 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.519853 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGTTACTA CAAATAGATC CCGCACGCGT GGCCGTCCAC GTAAGTTCGA TCCCGAGGCA 
GCGGTGGCGA CTGCGCAGCA ACTTTTCCAT GAACGCGGTT ATGACGCCGT CAGCGTCGCC 
GATGTCACCG ACGCGCTCGG CATCAATCCG CCAAGCTTTT ACGCCGCTTT CGGCAGCAAA 
GCCGGACTTT ACCAGCGCGT GCTCGATTAT TGGACGGACA CCGAAGCGAT TCCGCTCGCG 
GACATTCTGC GTCCCGACGT CCCCGTCGCC GATGCCGTTG CGGCTATGCT GGAGGAGGCC 
GCGCGTCGCT ATGCGTTCAA CCCGGCGGCA GGCGGGTGCC TTGTACTCGA AGGCACGCGT 
TGCAACGACG ACGATGCGCG CGAAGCCGCT CGCGCGCTCA ACCTCGGTGC GGAAACGTTC 
ATCCATGACT ATATCGCGGC GCGCCATCCG GAGGCGGCCG ATCAAGTGAC CGATTTTGTC 
GCCACGACGA TGTCCGGGCT TTCGGCAAAG GCGCGAAGCG GACACGACCT ATCGCGCCTC 
CTCGCTACAG CGCGGCTTGC AGGCAGCGTT CTCACGCAGG TGCTGCCGGC TTGA
 
Protein sequence
MVTTNRSRTR GRPRKFDPEA AVATAQQLFH ERGYDAVSVA DVTDALGINP PSFYAAFGSK 
AGLYQRVLDY WTDTEAIPLA DILRPDVPVA DAVAAMLEEA ARRYAFNPAA GGCLVLEGTR 
CNDDDAREAA RALNLGAETF IHDYIAARHP EAADQVTDFV ATTMSGLSAK ARSGHDLSRL 
LATARLAGSV LTQVLPA