| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Sala_0004 |
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| Symbol | |
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| ID | 4083135 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sphingopyxis alaskensis RB2256 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008048 |
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| Strand | - |
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| Start bp | 3205 |
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| End bp | 4959 |
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| Gene Length | 1755 bp |
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| Protein Length | 584 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 638008364 |
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| Product | putative inner membrane protein translocase component YidC |
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| Protein accession | YP_615063 |
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| Protein GI | 103485502 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0706] Preprotein translocase subunit YidC |
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| TIGRFAM ID | [TIGR03592] membrane protein insertase, YidC/Oxa1 family, C-terminal domain
[TIGR03593] membrane protein insertase, YidC/Oxa1 family, N-terminal domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0662479 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGGACGACA AGCGTAACCT GATCGCGGCA ATCCTGTTGT CGGTGGCGAT TTTGATCGGC
TGGAACTTCG TCGCCGAGCG GTTTTTCCCG ACCCCCGACC AGCCCGATGT GACCAAGACC
GTCGCCGGCG CCAACGGCGC GCCCGCGACC GCGCCCACGG CGCAGGGCCA GCCGAGCGCG
CTGCCCGCCC CGACGGCGGC CACCCCCGCG GCGGCGCAGG CGATCCGCCC GGTCGACGTC
GTGCTCGCCG AAGGGCAGCG CATCCCGATC GAAACCCCGG CAATCCGCGG CTCGATCAAC
CTCGTCGGCG CGCGCATCGA CGACATCACG CTCACCAAAT ATCGCCAGAC GATCAAGAAG
GACTCGCCCG CGGTGCGGCT GTTCGCGCCG GGCGGCACCC CCGCCGCCTA TTTTGCCAGC
CTCGGCTGGA CGGCGCAGGG CATTCAGCTT CCGGGCGCGG GCACCGTCTG GACTGCGAAC
GGAACGAAGC TGACCCCGAC CACCCCGGTA ACGCTGAGCT GGACGAACAC GACCGGCCAG
ACCTTCCGCA TCGAATATAG CATCGACGCC AATTACCTGA TCACCGCGAA GCAGACGGTG
GTGAACGCCG GCACCGCGCC GGTGTCGCTC AGCAGCTTTG CGCTCATCGA CCGCCTCGGC
AAGCCGACCG ACCCGCACGA GGTCGACAGC TGGACGATCC ATGTCGGGCC GACCGGCTAT
CTCGACGGCA AGTCGGTGTT CGACATCGAC TATGACGACC TCGAGGAAGC GCCGAACCGC
AGCGTGCGCT ACACTTCGGC AGGCTGGCTG GGCTTCACCG ACAAATATTG GCTCGCCGCG
ATCGTCCCGG CGAAGGGCGA ACGCGTGACC GCGGCGATCA GCTCGCCTGC GACGAACAAT
TACCAGACCT TGTTCGCGCG TGATTTTACG CAGGTCGCGC CGGGCCAGCA ACTGACGGCG
ACGAGCCGCA TCTTTGCGGG CGCCAAGGAA GTCGAGATTC TCGAAACCTA TCAGGACGAC
CAGGGCATCA CCCGCCTGTC GAACGCGATC GACTGGGGCT GGTTCGAGTT TTTCGAGGTG
CCGATTTTCA AGCTGCTCCA CTGGCTGTTC GAGAAGGTCG GCAATTTCGG GCTCGCGATC
ATGGCGCTGA CGCTGATCAT CCGCCTGCTG ATGTTCCCGA TCGCCAACCG GCAGTTTTCG
TCGATGGCAC AGATGCGCGT CGTCCAGCCG AAGATGAAGG CGCTGCAGGA GCGCTACAAG
GACGACAAGC CCAGGATGCA GCAGGAGCTG ATGAAGCTCT ATAAGGACGA GAAGATCAAT
CCGCTCGCGG GCTGCCTGCC GATCGTCATC CAGATCCCGA TCTTCTATGC GCTGTACAAG
GTGCTGATGC TGGCGATCGA AATGCGCCAC CAACCGTTCA TCCTGTGGAT CAAGGATCTG
TCGGCGCCCG ATCCGCTGCA CATCCTCAAC CTCTTCGGCC TCTTGCCCTT CACCCCGCCG
TCGATCCTGG CGATCGGGCT GCTCGCGGTG ATCCTGGGCG TGACGATGTG GCTGCAGTTC
CGTCTGAACC CCGCCCCCGC CGACCCGGTG CAGGCGCAGG TGTTCAAGAT CATGCCGTGG
CTGTTCATGT TCATCATGGC GCCCTTCGCG GCGGGCCTGC TGCTTTACTG GATCACCAAC
AATATCCTGT CGATCGGGCA GCAGCAGTGG ATGTATCGCA AGTTCCCGGC GCTGAAGGCG
GCGCCGGCGA AGTGA
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| Protein sequence | MDDKRNLIAA ILLSVAILIG WNFVAERFFP TPDQPDVTKT VAGANGAPAT APTAQGQPSA
LPAPTAATPA AAQAIRPVDV VLAEGQRIPI ETPAIRGSIN LVGARIDDIT LTKYRQTIKK
DSPAVRLFAP GGTPAAYFAS LGWTAQGIQL PGAGTVWTAN GTKLTPTTPV TLSWTNTTGQ
TFRIEYSIDA NYLITAKQTV VNAGTAPVSL SSFALIDRLG KPTDPHEVDS WTIHVGPTGY
LDGKSVFDID YDDLEEAPNR SVRYTSAGWL GFTDKYWLAA IVPAKGERVT AAISSPATNN
YQTLFARDFT QVAPGQQLTA TSRIFAGAKE VEILETYQDD QGITRLSNAI DWGWFEFFEV
PIFKLLHWLF EKVGNFGLAI MALTLIIRLL MFPIANRQFS SMAQMRVVQP KMKALQERYK
DDKPRMQQEL MKLYKDEKIN PLAGCLPIVI QIPIFYALYK VLMLAIEMRH QPFILWIKDL
SAPDPLHILN LFGLLPFTPP SILAIGLLAV ILGVTMWLQF RLNPAPADPV QAQVFKIMPW
LFMFIMAPFA AGLLLYWITN NILSIGQQQW MYRKFPALKA APAK
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