| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_1743 |
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| Symbol | |
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| ID | 6332687 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | + |
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| Start bp | 1799025 |
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| End bp | 1800758 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 33% |
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| IMG OID | 642658018 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_001931894 |
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| Protein GI | 188997643 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
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| TIGRFAM ID | [TIGR02538] type IV-A pilus assembly ATPase PilB |
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Plasmid Coverage information |
| Num covering plasmid clones | 36 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGGAAA ATCCTGAAAA AAAGCGTGTC TTTTTAGTCT TAAGAAGGAT GGTGGATTTA
GGCGTTATAC CTCTTGAAAA TGTAAGAGGA AATCCAGACG TAGACCCAAA AAAATCTTTT
GTAGAAGTTC TTGTAGCTCT AATAAAAAAA GGAAAAGCTG ATGAAAATAA AGTGAAAGAA
TTTTTCGTAA AAAATTTATC TTTTAAACCT TTTGACCCTA AAACACATAA AGTTAATCTT
ACTAAAGAAG TTTTAGAGAA ATTTCCTGTG TCTTTAATAG AAAAAAAATA CGTTGTTCCA
TTTGAATATT CTGAAGGAGT ATTAAAAGTA GCTGTATTAG ACCCAACAGA CAGAGAAATT
TTTACTCAAA TTAAATTTTC CACAAATGTT AAAACCGTAG AAACATATAT CGCTACTCTT
TCAGAAATAG AGGAGCTTAA AAAAGTAGTT GTTCCTTTAT TTCCTGCCAA AAAACTTTTG
GACGAAATAG ATCTAAATGC TGACGTGCAG ACTGAAGAAG AGCAAAAAGA ATCATCCTTT
GAAGAATTAT CAAAAGAAGC ACAAGATAGC CCAGTTGTAA AAGCTGTAAA TGCAATCATA
GCTGAAGCTA TAAACTTAGG TGCTTCGGAC ATTCATATAG AACCTATGGA AAAAGAACTA
AAAATCAGAT TTAGAGTTGA TGGTATATTG AGAACTTATA AAAGTTGGCC CGCACATATT
AAAGATGCAA TTGCTGCAAG GATAAAGATA CTTGCAAATT TAGATATTTC AGAAAAAAGA
CTTCCACAAG ACGGTAGGAT TAGATTTAGA GTAAATAATA GAAAATACGA TTTAAGGATT
TCTACTCTTC CAACAGTTTA TGGAGAAAAA ATTGTTATGC GCCTTCAAGA TGCAGAAAGT
TATTTAAATG TAAAACTTGA AAATTTAGGA TTTGAAGAAG ATGACCTTAA AATTGTAAGA
GAAGCTATAT ATTCCCCATG GGGAATGGTT CTTGTTACAG GTCCAACAGG CTCTGGTAAA
ACTACTACTT TATACTCTGC ACTGATGGAG AGAAACACAG ATGATGTTAA CATAATGACA
GTAGAAGACC CTGTTGAAGT ATCAATTCCA GGTATTAATC AAGTTCAGGT AAAAGAAGAG
ATAGGGCTTA CTTTTGCGGC AGCTCTAAGA GCATTTTTAA GACAAGACCC AGATATAATT
TTAGTTGGTG AGATAAGGGA TAGAGAAACT GCTGAAATAG CAGTAAAGGC AGCATTGACA
GGACACTTAG TATTTTCTAC TCTACATACG AACGATGCCC CATCAACTAT AACAAGATTG
GTAGACATAG GGGTTGATAA ATTTTTAGTT TCTACAGCAG TCCATACAAT AATTGCTCAA
AGGCTTATTA GAAAATTATG CAATAATTGT AAAGAGCCTG CCAATTATAC TCCTGAAGTT
TTAAAAACTT TTGGATTTTC GGATGAGGAT ATACAAACGG GGCAATTTTT TGTTCATCAT
CCAAAAGGTT GTGATAAATG TAACGGAACA GGATATAAAG GAAGAACCGC AGTTCATGAA
ATCCTAAAAT TGGACGAAAA TATAAGAAAG GCTATAAACG AAGGTAAAAC AGCTGACGAA
TTGAAAGAAA TAGCAATAAA AACTGGAATG AGAACTTTGT ATAAAGACGG ATTAATAAAA
ATGAAAAAAG GCTTAACAGA TATAGCAGAG ATAGAGAGAG TGTTAATGAA GTGA
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| Protein sequence | MQENPEKKRV FLVLRRMVDL GVIPLENVRG NPDVDPKKSF VEVLVALIKK GKADENKVKE
FFVKNLSFKP FDPKTHKVNL TKEVLEKFPV SLIEKKYVVP FEYSEGVLKV AVLDPTDREI
FTQIKFSTNV KTVETYIATL SEIEELKKVV VPLFPAKKLL DEIDLNADVQ TEEEQKESSF
EELSKEAQDS PVVKAVNAII AEAINLGASD IHIEPMEKEL KIRFRVDGIL RTYKSWPAHI
KDAIAARIKI LANLDISEKR LPQDGRIRFR VNNRKYDLRI STLPTVYGEK IVMRLQDAES
YLNVKLENLG FEEDDLKIVR EAIYSPWGMV LVTGPTGSGK TTTLYSALME RNTDDVNIMT
VEDPVEVSIP GINQVQVKEE IGLTFAAALR AFLRQDPDII LVGEIRDRET AEIAVKAALT
GHLVFSTLHT NDAPSTITRL VDIGVDKFLV STAVHTIIAQ RLIRKLCNNC KEPANYTPEV
LKTFGFSDED IQTGQFFVHH PKGCDKCNGT GYKGRTAVHE ILKLDENIRK AINEGKTADE
LKEIAIKTGM RTLYKDGLIK MKKGLTDIAE IERVLMK
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