Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SYO3AOP1_1669 |
Symbol | |
ID | 6331859 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
Kingdom | Bacteria |
Replicon accession | NC_010730 |
Strand | - |
Start bp | 1726422 |
End bp | 1730051 |
Gene Length | 3630 bp |
Protein Length | 1209 aa |
Translation table | 11 |
GC content | 33% |
IMG OID | 642657944 |
Product | hypothetical protein |
Protein accession | YP_001931821 |
Protein GI | 188997570 |
COG category | [V] Defense mechanisms |
COG ID | [COG1002] Type II restriction enzyme, methylase subunits |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 35 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGGATAAGC TTTCAGACCT TGCAAAGGAT TTTTCACTTG AAAATTTAGA AAGATACTTA TTAGACAAAG GATTTACTGT TGATATAAGC CCAGCTCATT ACACTCAAGA TATTGAAGAA AAATATAACA TATTAGACAT AAAAGAAATT GGATACATTA GATTAAAGCA AGATGCAGAT TTAGTAGTTT TTGCTATTAA GATTAACAAC CTTACAGAAA GGACAAGTAA GAAAAATCAG TTTGATATTG CTAAAAGACT TTTAGAAAGA TATCAAAAGT TTTATGGACT ATTTGTATTT TATGATGATA ATAAAAACTT TAGACTTTCT TTTGTGTTTA AGACTACCCA TGGCACAAAG GCAAAGTATA GCCACTACAA AAGATTTACA TTTTACGTAA GTCCAAATTT ACCAAACAAA ACGTTTATAA ATCAGCTTAA AGATTGTGAT TTTACAGATT TAGACTCTAT AAAGCAAGCT TTCAGCGCCC AACCTATCAC AAGAGATTTT TACAATGATC TTCAAAACTG GTATTACTAT GCACTAGATA AAGTTAAATT TCCTGATGAT TATAAATACT CTGATGACCC GGAAAAAGAC AGAGAAATCA GAAACGCCCA AAGCTTAATC AGACTTTTAA CAAGATTAAT GTTTATATGG TTTTTAAAAG AAAAAGGTTT AGTGCCAAAT AAGTTATTTG ATGAAAAAGA GCTAAAAAAC ATAGTCAAAG ACTTTGGCAA AGGTGATAAC TATTACAATG CAATTTTGCA GAATCTATTT TTTGCAACTT TGAATAGACC TATTAAAGAA AGAGGTTGGG CAGAAGATAA AGGCTTTCCT GCAAACAAAA AAGATTTTGG AGTAAAAAGC TTATACAGGT ATGAAAATAA GTTTTTGATA AGTAAAGAAG AAGTAATTTC AGAGCTGTTT AAAAATATTC CATTTATAAA TGGTGGACTT TTTGACTGTT TGGATAAAGA CAAAATTTAT ATAGACGGAT TTTCAAGAAA TGAAAAGAAG CAGGCTAAAA TCAGTGATGA ATTGTTTTTT AGCCAAGAAG AAAAAACAGT TGATTTATCC AAGTATGGTT TAGGCAAAAA TGCAAAGGTT AGAGGACTTA TTGATATCTT AAAAAGCTAT AACTTTACAA CAGATGAAGC AACGCCGATA GACCAAGAGA TAGCCCTTGA CCCAGAGCTG CTTGGAAAAG TATTTGAAAA TCTTCTTGCA AGCTATAATC CAGAAACTAA TACAACAGCA AGAAAGGCAA CAGGCAGCTA CTACACGCCA AGAGAGATAG TAGATTACAT GGTAGAAGAG AGCTTAAGAG AGTATCTAAA AACAAAAGTG CCAGAAGCAG AAAATATTTT TGATGACCTA TTCTCTTATT CTGATAAAGA ACCAAACATT TCAGATGATT TAAGAAAAAA ACTAATTCAA GCAATAGACC AGATAAAGAT AATAGACCCT GCCTGTGGCT CCGGTGCCTT TCCGATGGGC ATTCTTCATA AGCTTGTATT TTTACTTCAA AAGCTTGACC CGTCTAATGA AATTTGGAAA GATATTCAAT TAGAGAGAAC ATCCAAGGAA GCAGATGCGG TATTTAGATC AGAAAAAGAT AAGCAAGAAA GAGAAAAGCT GTTAGAAGAA ATCAATGAAA ACTTTGACGA AAGCATAAAC TATCCAGACT ATGCAAGAAA GCTTTATTTG ATAGAAAACT GTATATATGG AGTAGATATA CAGCCAATAG CTATACAGAT TAGCAAGCTA AGATTTTTTA TATCTTTGAT ATTAGACCAG AAAGTAGATA GAAGTAAACC AAACTTTGGA ATTTTAACCT TGCCAAATCT TGAGACCAAG TTTATTTCTG CAAATGCTTT GATTGGACTG GAAAAACCTG CTCAAAAATC TTTAAGAAAT CCGGAGATTG AAAAGTTAGA GCAAGAGCTG AAGTTTTTAA GACATAGATA TTTTAGAATT AAGTCAAGGG CTGAAAAGAT TCAATTACAG AATAAAGATA AAGAGCTGAG AGAGAAGTTA AAGAATGCTT TGATTGGCGA TGGTTGGAAT GATAAAGTAG CTGAAAAGAT AGCTAATTTT GATATTTTTG ACCAAAATGC ATCTGCTGAT TGGTTTGACC CAGAGTGGAT GTTTGGAGTA GTTGATAGCT TTGATATTGT GATTGGTAAT CCGCCGTATG TAAGACAGGA AAAGATAAAA CCAATTAAGC CAATTTTACA AAAACAAAAC TACGAAGTCT TTACATCAAC AGCAGACCTT TATGTTTATT TCTATGAAAA AGGCTATCAT TTGTTAAAAG AGCAAGGAAT TTTAGCATAC ATAACAAGCA ACAAATGGAT GAGAGCTAAG TATGGAGAGA AGTTAAGAAA GTTTTTAAAA GAAAAGACAG CTATTTTAGA GATTATAGAT TTTAGTGGTT ATAAAGTTTT TGAGCAAACG GTAGATACTA ATATTTTGAT TTTTAGAAAG GAAAAGACAA GCAAGGAGCA TATTTTTAGG TTTTTAGAGG TTAAAGGTGA TATTGAAGAT ATTGATGAGT ATTTGAGACA AGGCAAATCA AAGTTGATTG AGCAAGCTAC TGGGAAAGGA GTTGAGTATT TAGATAGTTG GTCTCAGGTA GATACATGGC AAGAGCTTAG AACATGGCAA ACGATGTATC AAAGTAAGCT TTCTAATAAT GCTTGGACGC TTGGAGATGA AAGTGTTTTG AGTTTAAAAG AAAAAATTGG AAAAGTAGGA AAACCTCTAA AAGAGTGGGA CGTAAAGATT TATTTTGGGA TTAAAACAGG CTACAACGAT GCTTTTATCA TAGATACGGA AACACGAAAC AGGATTTTGG CAAGTTGTAG GGATGAAGAA GAGAGAAAGA GAACAGAGGA AATTATTAAG CCAGTTTTAA GAGGTAGAGA TATTGAGAAA TACAGGTATA AATGGGCTGG ATTGTGGATT ATAGTTATAC CTGCTGGTTG GACTAACAAG CATAGAGGAA GAAAAAATCC AGAGGAGTTT TTTAAAGAGA GTTTTTCATC TTTATACAAT CATTTTATGA GCTTTTCTAA CGTAAAAAAC AAAGGTAAGG GGCTTTTTAA ACGAGACGAT CAAGGTGATT ACTGGTGGGA GTTAAGACCT TGCGATTACT ACCCAGAATT TGAAAAAGAA AAGATAGTGT GGAAGAGAAT AACTAAATCT CCTAAGTTTG CAATAGTTCC TTCGGGATAT TATTGTGAAG CAACAACTCA CTTTATAACA ACAAATGAAG ATACCTCCGA TATTCGTAAG TATCTCTTGG GTATTTTCAA TTCCGAATTT TTTGAATTTG CTTTTTACAA ATTCTATATG GGAGGAGGAA TAGAAGGCGA AATTAAAGGG GAATTCATAG GAAGATTTCC TCTTCCCCCA ATCACAAAAG AAAACCAACC CATAGCAGAC CAAATAGTCC AAAAAGTAGA CCAAATCCTA ACCCTTACCC AATCTGAAGA TTATGACACA AACCAAGAAA AACAACAGCA TGTAAAAAAT CTTGAGCATG AGATAGACCA GCTTGTATAT CAGCTTTACA GCCTAACAGA AGAAGAAATA AAGATTATAG AAAATGCATA CTTTAGGTGA
|
Protein sequence | MDKLSDLAKD FSLENLERYL LDKGFTVDIS PAHYTQDIEE KYNILDIKEI GYIRLKQDAD LVVFAIKINN LTERTSKKNQ FDIAKRLLER YQKFYGLFVF YDDNKNFRLS FVFKTTHGTK AKYSHYKRFT FYVSPNLPNK TFINQLKDCD FTDLDSIKQA FSAQPITRDF YNDLQNWYYY ALDKVKFPDD YKYSDDPEKD REIRNAQSLI RLLTRLMFIW FLKEKGLVPN KLFDEKELKN IVKDFGKGDN YYNAILQNLF FATLNRPIKE RGWAEDKGFP ANKKDFGVKS LYRYENKFLI SKEEVISELF KNIPFINGGL FDCLDKDKIY IDGFSRNEKK QAKISDELFF SQEEKTVDLS KYGLGKNAKV RGLIDILKSY NFTTDEATPI DQEIALDPEL LGKVFENLLA SYNPETNTTA RKATGSYYTP REIVDYMVEE SLREYLKTKV PEAENIFDDL FSYSDKEPNI SDDLRKKLIQ AIDQIKIIDP ACGSGAFPMG ILHKLVFLLQ KLDPSNEIWK DIQLERTSKE ADAVFRSEKD KQEREKLLEE INENFDESIN YPDYARKLYL IENCIYGVDI QPIAIQISKL RFFISLILDQ KVDRSKPNFG ILTLPNLETK FISANALIGL EKPAQKSLRN PEIEKLEQEL KFLRHRYFRI KSRAEKIQLQ NKDKELREKL KNALIGDGWN DKVAEKIANF DIFDQNASAD WFDPEWMFGV VDSFDIVIGN PPYVRQEKIK PIKPILQKQN YEVFTSTADL YVYFYEKGYH LLKEQGILAY ITSNKWMRAK YGEKLRKFLK EKTAILEIID FSGYKVFEQT VDTNILIFRK EKTSKEHIFR FLEVKGDIED IDEYLRQGKS KLIEQATGKG VEYLDSWSQV DTWQELRTWQ TMYQSKLSNN AWTLGDESVL SLKEKIGKVG KPLKEWDVKI YFGIKTGYND AFIIDTETRN RILASCRDEE ERKRTEEIIK PVLRGRDIEK YRYKWAGLWI IVIPAGWTNK HRGRKNPEEF FKESFSSLYN HFMSFSNVKN KGKGLFKRDD QGDYWWELRP CDYYPEFEKE KIVWKRITKS PKFAIVPSGY YCEATTHFIT TNEDTSDIRK YLLGIFNSEF FEFAFYKFYM GGGIEGEIKG EFIGRFPLPP ITKENQPIAD QIVQKVDQIL TLTQSEDYDT NQEKQQHVKN LEHEIDQLVY QLYSLTEEEI KIIENAYFR
|
| |