Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SYO3AOP1_0811 |
Symbol | |
ID | 6331957 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
Kingdom | Bacteria |
Replicon accession | NC_010730 |
Strand | + |
Start bp | 850523 |
End bp | 852514 |
Gene Length | 1992 bp |
Protein Length | 663 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 642657107 |
Product | excinuclease ABC subunit B |
Protein accession | YP_001930998 |
Protein GI | 188996747 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0556] Helicase subunit of the DNA excision repair complex |
TIGRFAM ID | [TIGR00631] excinuclease ABC, B subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 1 |
Plasmid unclonability p-value | 0.000000000131315 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGTAAAA AAATATTCAA TCTAAAATCA AACTTTAAAC CTACCGGAGA CCAGCCAAAA GCTATAAAAC AGCTTTATGA AAATCTTATT TCAGGTGTAA ACCAGCAGGT CTTGCTTGGT GCAACAGGAA CAGGTAAGAC CTTTACCATA GCCAACCTTA TTGAAAAATA CGGAAGACCA ACCTTGATAT TGTCCCATAA CAAAACTTTA GCAGCACAGC TTTACAGAGA AATAAAAGAG CTGTTTCCTG ACAATGCCGT TGAATACTTT GTGTCTTATT ATGATTATTA CCAACCGGAA GCCTACATTC CACAAAAAGA CCTATACATA GAAAAAGACA GTGCAATCAA TGATGCAATA GACAGGCTAA GACATTCAGC AACAAGAAGT CTGATAGAAA GACCGGATAC GATTGTAGTA GCTTCTGTAT CCTGCATATA CGGACTTGGA ACGCCAGAAT TTTATGAAAA GTTAAGATTA CAACTTTACG TTGGAATGGA AATAGACAGA CAAACACTTT TGAGAAAATT GGTAGAACTT CAATATCAAA GGGATGACTT TTCGTTAAAA AGAGGAACGT TTAAAGTAAA AGGTGATACA GTTGAAATCT TGCCGGCATA CACAGAAGAC ATTATTGTAA GAGTTGAGTT TTTTGGCGAT GAAATAGAAA GTATATCAGA AATAGATATT TTTAATAGAG ATGTAAAAAG AAAACTTGAT AGAACTGTTA TCTTTCCGGC GAGCCACTAT GTTATACCAA GACCGGATAT GTTAGAGGCT ATAAAACAGA TACAAAAAGA TTTAGAGATA GAAGTAGAAG AGTTTAGAAG AGCAGGAAAA GAGATAGAAG CAAACAGGCT TTGGCAAAGG ACAAATTACG ATATAGAAAT GATGCTTGAA CTTGGAACGT GTAAAGGGAT AGAAAACTAT TCAAGATACT TTGACGGCAG AAAGCCAGGA GAACCACCTT ACACTCTTAT TGATTACTTT CCGGAAGATT TTTTACTTAT AGTAGATGAG TCTCACGTTA CAATTCCACA GATAAAAGCA ATGTATAACG GAGACTTTTC AAGAAAAGAA AACCTTGTTA AATATGGCTG GAGAATGAAA TCAGCCTACG ATAACAGACC TTTAAAATTT GAAGAATTTG TGCAAAAAAT ACAAAAAGCG ATTTACGTAT CGGCAACACC GGCAGATTGG GAAATCAAAA GGTCAAAAGG TGTAATAGTT GAGCAGATAA TCAGACCAAC AGGCTTGCTT GACCCAGTAA TAGAAGTTAA AAAAACCGAA GGTCAAATAG ATGATTTAAT CAATGAAATA TGGAAAGTCA AAGAAAGGGA TGAAAGAGTC ATTGTAATAA CGCTAACCAA AAAAATGGCA GAACATTTAG CAGATTATCT GACAGAAAGA GAAATAAAGG CAATATACCT ACATTCAGAA ATAGACACGA TAGAGAGGGT AAAGATAATA AAAGAATTTA GAGAGGGAAA GTATGATGTA ATTGTTGGTG TAAACTTATT AAGAGAAGGT CTTGATATGC CGGAAGTATC TTTAGTTGCA GTGCTTGATG CAGATAAGCA GGGATTTTTA AGGTCCAAGA CAGCATTAAT TCAAACTATC GGAAGAGCAG CAAGAAACGT AAATGGAAAA GCTATTTTAT ACGCTGATAA ACTAACACCG GCAATGATAG AGACAATAGA AGAGACAAAC AGAAGAAGAA AAATTCAAGA AGAGTACAAT AAAAAACATG GAATAATTCC AAAAACTATA TCAAAAGAGG TAAAAGACTT AATCTCCTTA GAAGAGCTTG GAATACTTGA AATATATAAC CAGCTACCGG ACGATATAAA CTCAGAAGAA GATCTAATGA AAAAGATCGA GCAGCTTGAA AAACAGATGT GGGACTATGC TAAAAATTGG GAGTTTGAAA AAGCAGCAGA AATTAGAGAC CAACTTGAAA AATTAAAAAA ATTAGCAACA GTGATTGGAT GA
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Protein sequence | MSKKIFNLKS NFKPTGDQPK AIKQLYENLI SGVNQQVLLG ATGTGKTFTI ANLIEKYGRP TLILSHNKTL AAQLYREIKE LFPDNAVEYF VSYYDYYQPE AYIPQKDLYI EKDSAINDAI DRLRHSATRS LIERPDTIVV ASVSCIYGLG TPEFYEKLRL QLYVGMEIDR QTLLRKLVEL QYQRDDFSLK RGTFKVKGDT VEILPAYTED IIVRVEFFGD EIESISEIDI FNRDVKRKLD RTVIFPASHY VIPRPDMLEA IKQIQKDLEI EVEEFRRAGK EIEANRLWQR TNYDIEMMLE LGTCKGIENY SRYFDGRKPG EPPYTLIDYF PEDFLLIVDE SHVTIPQIKA MYNGDFSRKE NLVKYGWRMK SAYDNRPLKF EEFVQKIQKA IYVSATPADW EIKRSKGVIV EQIIRPTGLL DPVIEVKKTE GQIDDLINEI WKVKERDERV IVITLTKKMA EHLADYLTER EIKAIYLHSE IDTIERVKII KEFREGKYDV IVGVNLLREG LDMPEVSLVA VLDADKQGFL RSKTALIQTI GRAARNVNGK AILYADKLTP AMIETIEETN RRRKIQEEYN KKHGIIPKTI SKEVKDLISL EELGILEIYN QLPDDINSEE DLMKKIEQLE KQMWDYAKNW EFEKAAEIRD QLEKLKKLAT VIG
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