| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SYO3AOP1_0790 |
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| Symbol | |
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| ID | 6332685 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Sulfurihydrogenibium sp. YO3AOP1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_010730 |
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| Strand | - |
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| Start bp | 828222 |
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| End bp | 830333 |
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| Gene Length | 2112 bp |
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| Protein Length | 703 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 642657085 |
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| Product | polynucleotide phosphorylase/polyadenylase |
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| Protein accession | YP_001930977 |
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| Protein GI | 188996726 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG1185] Polyribonucleotide nucleotidyltransferase (polynucleotide phosphorylase) |
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| TIGRFAM ID | [TIGR03591] polyribonucleotide nucleotidyltransferase |
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Plasmid Coverage information |
| Num covering plasmid clones | 8 |
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| Plasmid unclonability p-value | 0.0000902689 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAAGAGA TTAAAATAGA AACTGTAGTC AACGGAGCAC CATATAGCAT AGAAACAGGA
TACTTTGCAA AGCAGGCAAA CGGTGCCGTA ATCGTAAGAC AAGGAGATAC AGCAGTTTTA
GTTGCTGCAG TTATGTCTGA AGAGCCTCAA GCTGATATAG ATTTTCTTCC ATTAACGGTT
GAATACAGAG AAAAATATTA TGCTTATGGT AAGATCCCGG GTGGATTTGT TAAAAGGGAA
GGAAAACCTT CAGAGAGAGA AATTTTAGTT GCAAGAAATA TAGATAGACC TATCAGACCT
TTATTCCCAA AAGGTTTTTA TAATGATGTA ATCATCACAG CTTATACATT ATCCGCAGAT
GATCAGTATG ACCCAGATGT TTTAGGTATA GTTGGAGCTT CTGCTGCTTT GCATATCTCA
GACATCCCAT TTGAAGGGCC AATTGCTGGT GTTAGAGTTT GTAGAGTAGA TGGTCAATTT
ATAGTTAATC CAACTTATCA ACAAAAAGCA AAATCGGATT TAGAAATTGT TGTTGCTGGT
TCTAAAGACG CCATCGTTAT GGTAGAGGGT GGGGCTAAGG AAGTTCCAGA AGAGGTTATT
CTTGAAGCTA TGCTTTTTGG TCATCAGGAA ATTAAAAAAT TAATAGAATT ACAAGAAGAG
CTTAGGGCAA AATACGGAAA AGAAAAAATT GAAATACCAA TAGATGAAGA AGAAATTTTA
CTGAAAGAGA AATTTAAAGA ATTAGCCTAT GTAAGAATTA AAGAAGCATT TAATATTTCA
GATAAAAAAG AAAGAAATAA ACAGATAAAT GCTATTTTTG AAGAAATTAA AACTACATTA
GAAATTCCTG AAGAAAAAGT AAAAAAAGCT TCTTTTGTCT ATAAAGATGT TGTTAGTAAT
GTTATGAGAG ACCTTGTACT TTATGAAAAT ATAAGAATTG ATGGAAGAAA ACCAGAAGAA
ATTAGACCTA TTTGGATAAA AGTTGGAGTT TTCCCAAGAA ATCATGGTTC AGCTATCTTT
ACAAGAGGGC AGACTCAAGC TTTCGTAACT GTAACACTTG GTTCACCTTC TGAAGGACAG
ATAGAAGAGA GTATAGAAGC CGGTGAGACT CTAAAAAGAT TTATGCTACA TTATAACTTC
CCACCATTCT CAACAGGAGA AGCAAAGCCT CCAAGACCGG TATCAAGAAG AGAGATTGGT
CATGGAAATC TTGCAGAGAG GGCATTGGAA CCTTTAATTC CATCGGAAGA GGAATTTCCA
TATGTTATAA GAGTAGTATC TGATATTTTA GAATCTAACG GCTCAACATC TATGGCAACA
GTTTGCGGCG GTTCATTGGC ATTATTCGAT GCTGGCGTTC CAATGAAAAA ACATGTTGCC
GGAATAGCAA TGGGTTTAAT AAAAAGTGAA GATAAATTTG TAGTATTATC TGATATTCTT
GGAGATGAAG ATCATCTTGG CGATATGGAC TTTAAAGTTG CCGGAACAAG AGATGGTGTA
ACTTCTATAC AAATGGATAT TAAAGTTAAA GGTTTAACAA GGGAAATTTT ACAGAAAGCA
TTAGAGCAAG CAAGAGAAGG CAGAAACTAT ATACTTGACC TTATGTATCA AGCTATACCA
GAGCCACGAA AAGAGTTATC TCCATATGCA CCAACAGTAA CAACTCTTAG AGTACTTCCA
GAAAAAATAA GCGTGATTAT AGGTCCAGCA GGTAAAAATA TTAAGAAGAT AATAGAAGAA
ACAGGCGTTA AGATTGACTT AGATCCAACT GGTTTAGTAA AGATATATGC AACAAGTAAA
ATAGCTGCAG AAAAAGCTAT CGATATGATA AATCAGCTTA TAATGGATAT AGAGCTTGGA
GAAGTATACT TAGGTAAAGT TACAAGAGTT GAAGATTATG GTGCATTTGT AGAATTAATG
CCTGGTAAAT TATCATTATT ACATGTATCA CAAATCTCTT CAGAAAGATT AAAATCTGCT
AAGGATGTAG TTAAAGTAGG AGATGTTTTA AAAGTTAAAG TTTCAGAAAT TGATGACCAA
GGTAGAATAA AAGTTTCTCT AAAAGACGTT CCAGAAAATG TAGAAGCTAA AAATAAATTT
TTATTTGAAT AA
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| Protein sequence | MEEIKIETVV NGAPYSIETG YFAKQANGAV IVRQGDTAVL VAAVMSEEPQ ADIDFLPLTV
EYREKYYAYG KIPGGFVKRE GKPSEREILV ARNIDRPIRP LFPKGFYNDV IITAYTLSAD
DQYDPDVLGI VGASAALHIS DIPFEGPIAG VRVCRVDGQF IVNPTYQQKA KSDLEIVVAG
SKDAIVMVEG GAKEVPEEVI LEAMLFGHQE IKKLIELQEE LRAKYGKEKI EIPIDEEEIL
LKEKFKELAY VRIKEAFNIS DKKERNKQIN AIFEEIKTTL EIPEEKVKKA SFVYKDVVSN
VMRDLVLYEN IRIDGRKPEE IRPIWIKVGV FPRNHGSAIF TRGQTQAFVT VTLGSPSEGQ
IEESIEAGET LKRFMLHYNF PPFSTGEAKP PRPVSRREIG HGNLAERALE PLIPSEEEFP
YVIRVVSDIL ESNGSTSMAT VCGGSLALFD AGVPMKKHVA GIAMGLIKSE DKFVVLSDIL
GDEDHLGDMD FKVAGTRDGV TSIQMDIKVK GLTREILQKA LEQAREGRNY ILDLMYQAIP
EPRKELSPYA PTVTTLRVLP EKISVIIGPA GKNIKKIIEE TGVKIDLDPT GLVKIYATSK
IAAEKAIDMI NQLIMDIELG EVYLGKVTRV EDYGAFVELM PGKLSLLHVS QISSERLKSA
KDVVKVGDVL KVKVSEIDDQ GRIKVSLKDV PENVEAKNKF LFE
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