Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | STER_1421 |
Symbol | |
ID | 4438003 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Streptococcus thermophilus LMD-9 |
Kingdom | Bacteria |
Replicon accession | NC_008532 |
Strand | - |
Start bp | 1329610 |
End bp | 1330506 |
Gene Length | 897 bp |
Protein Length | 298 aa |
Translation table | 11 |
GC content | 42% |
IMG OID | 639677028 |
Product | ribosomal large subunit pseudouridine synthase, RluD subfamily |
Protein accession | YP_820779 |
Protein GI | 116628160 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
Num covering plasmid clones | 4 |
Plasmid unclonability p-value | 0.00665782 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGATATG AATTTACTGT AGGACGTTCA TGTCGAGTTA AAACCTTTTT GAAGGAGCAC GATATTTCAA AAGGACTTCT AGCCAAAATT AAGTTTGAGG GAGGTCACAT CTGGGTCAAT GGTGAGGAGC AGTTTGCGAC TTATCCTGTC CATGAGGGAG ACGTGGTTGC CATAGAAATC CCTGATGAGG CCCCGCATGA AACCTTGAAG CCAATTCCTT TTGACTTGGA TATAGTCTAT GAGGATGATA ACTTCTTGGT GATTAATAAA CCCTATGGCT ATGCTAGTAT TCCAAGTGTT AACCATGATA ATACCATGGC TAACTTTGTC AAACATCACT TTGTCAGCAA TAATTATCCC AACCAGCGTG TCCATATCGT GACACGTTTG GATAAGGACA CATCTGGTCT CATGCTGTTT GCCAAGCATG GTTACGCCCA TGCTCGTATG GATAAACAGT TACAACAGAA GTCTATAAAA AAACATTATT ATGCCTTGGT TGAAGGTGAG ACCAAGCTTG AGCAGGAGGG TGAAATCATT GCACCGATTG CGCGTGATGT GGATTCCATT ATCACACGTC GAGTCCATAA ATCGGGGAAA TATGCTCACA CTAGTTATCG TTTGGTAGGT GATTATGGTA GGGTTAAACT GGTTGATATC AATTTGCATA CTGGGCGTAC CCACCAGATT CGTGTCCACT TTGCCCATTT GGGACTCCCC CTTTTAGGAG ATGACCTTTA TGGTGGTTCT CTAGACTATG GTATTGAGCG CCAGGCCTTG CATTGCCACC GACTTGCATT TGTTGATCCT TTCACCAAAA AAGAAATGGT CCATGAGTCT TCCTTGACAG ATGATTTTGA AACCGTTATC ATGGATTTGA AAACTAAAAA AGATTGA
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Protein sequence | MRYEFTVGRS CRVKTFLKEH DISKGLLAKI KFEGGHIWVN GEEQFATYPV HEGDVVAIEI PDEAPHETLK PIPFDLDIVY EDDNFLVINK PYGYASIPSV NHDNTMANFV KHHFVSNNYP NQRVHIVTRL DKDTSGLMLF AKHGYAHARM DKQLQQKSIK KHYYALVEGE TKLEQEGEII APIARDVDSI ITRRVHKSGK YAHTSYRLVG DYGRVKLVDI NLHTGRTHQI RVHFAHLGLP LLGDDLYGGS LDYGIERQAL HCHRLAFVDP FTKKEMVHES SLTDDFETVI MDLKTKKD
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