| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | STER_0356 |
|---|
| Symbol | nrdR |
|---|
| ID | 4437120 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Streptococcus thermophilus LMD-9 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008532 |
|---|
| Strand | + |
|---|
| Start bp | 312381 |
|---|
| End bp | 312860 |
|---|
| Gene Length | 480 bp |
|---|
| Protein Length | 159 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 639676087 |
|---|
| Product | transcriptional regulator NrdR |
|---|
| Protein accession | YP_819854 |
|---|
| Protein GI | 116627235 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1327] Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains |
|---|
| TIGRFAM ID | [TIGR00244] transcriptional regulator NrdR |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000016324 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCGTTGTC CAAAATGTCA ACATAATAAA TCTAATGTTA TCGATAGCCG TCAGGCAGAG
GATGGAAATA CCATTCGTCG TCGTCGAGAG TGTGATGCTT GTCATGCCCG TTTTACTACA
TTTGAGCGTG TGGAAGAAGT TCCACTTTTA GTTGTCAAAA AAGACGGTAC TCGTGAACAA
TTCTCTCGCG ATAAGATTTT CAATGGTATC TCGATGAGTG CTCAGAAGCG TCCAGTTTCA
AGTGAGGATA TTGAAAATGC CATCACCCGT ATAGAGAAAA ACATTCGCCG TAACCATGAT
GGAGAGGTTG ATAGTGAGGT CATTGGGAAT TTAGTCATGA AAGAACTAGC AGATCTTGAT
GAAATTACCT ATGTCCGTTT TGCTAGTGTC TACCGTTCTT TCAAAGATGT TGATGAGATT
GAAGAATTGC TTCAAGAAAT TACCAAGACT GTCCGTGCGA AAAAAGAGTC TAAAAAATGA
|
|---|
| Protein sequence | MRCPKCQHNK SNVIDSRQAE DGNTIRRRRE CDACHARFTT FERVEEVPLL VVKKDGTREQ
FSRDKIFNGI SMSAQKRPVS SEDIENAITR IEKNIRRNHD GEVDSEVIGN LVMKELADLD
EITYVRFASV YRSFKDVDEI EELLQEITKT VRAKKESKK
|
|---|
| |