| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_A0045 |
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| Symbol | |
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| ID | 1172468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004349 |
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| Strand | + |
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| Start bp | 33623 |
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| End bp | 34993 |
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| Gene Length | 1371 bp |
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| Protein Length | 456 aa |
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| Translation table | 11 |
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| GC content | 46% |
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| IMG OID | 637346504 |
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| Product | phage integrase family site specific recombinase |
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| Protein accession | NP_720381 |
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| Protein GI | 118725028 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.869382 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAAATAG TGAAATTAAC ACAAGTGTTT ATTCGGTCAT TAGCTCGTCA AACACGCGCC
TACACCATTC AAGACAGTCT CTGTCATGGC CTTGGCGTTA AAGTGATGCC CGATAAACCG
ATGCAGTACG TTATTAGCCG CCTTATTGAT AATCGGACAC GCACACGCAT TCTTGCGCCT
GTTAGTGCGC TAACGGTTAA AGCGGCACGG GAGAAAGCAA CAGGGCAGCT TCAAGCATGG
CGAGAGGAAC ACACTCAACC GAGCATGAGT GCTTCCCCCC GTTTTGATGT GTTTGTTGAA
CAAACATGGA AGCCGATGAT TTTTGAACAC TGGAAACCCA GTACAAAACG GTCAGTCTTG
CCCGCGCTGA ATAGACGCTT GTTAGCACAT TTTGGCCGTT ACCCGTTGCA CATGATTAAC
CATAAGATGG TGCAAGCATG GTTTGATGAG ATTAGTAAAA CGCGCAAAGG TGCCGCTAAC
CGTAACCTTG ATACATTGCA ATCCGTTTTC AAGTTAGCAT TGAGGCAGGG GCATTGCCTG
ACGAATCCCT GTATTGGTAT TCGGCAAAAC AAAAGGCGGG TATTAAATCG CTTTTTGAGT
GTTGCTGAAA TGCAGCGTTT ATCTGTGGCG CTTGATGAAT GTGAAGCGGT CGGCGGCAGT
ATTGCTCAAT GTGCTGATGT TTTGCGGCTT TTACTGCTAA CAGGCTGCCG ATTATCGGAA
ATCACTTTTT TAAAAGGGGA GTACGTGCGC GGCAATGAAT TGCATTTACC TGACAGTAAA
ACGGGGGCAA AAGTGCTTTA TATTGGTCAA GCCGCAGTTG ACATATTAAG TCGCTATCAC
TGTAAGGCCA ATACAGAACT TTTTCCGATG AAACAGGGCG CTTCCACCTC ATTGGTACAG
TCGCTATGGC TAAGGTTGCG AAAACAGATA GGGGTTGAAG ATGTGAGATT GCATGATTTA
CGGCATACCT TTGCAAGTTA TGCCGTCATG GACGGATGCA GTATTCCGAT GGTGGCCTCT
TTACTGGGGC ATAAAAAAGT CACAATGACA TTACGATATA CCCATGTAGG GGATGATAGC
GTAGAGCAAG CCTCTGAGGT TATTGGGGCT GTCTTCAAAG GCATTTTTAC TCAGCCTGAG
CCCCCTAAGC CCTTAATCCC CCGAACTAAT GAGACTCCCA TGCCAGCCGT AAAAGTAAAG
CAAAAGCGTC TGCCAGAAAG AAAACCAACA GCGAAGCCAA AGCCTAAAGC GGTGAAGAAA
GTGAAGCAAG TTAAACCATT ACAGAAACTG CCCACTTTAA CTAAAGAGGA ACTTCGTGCG
ATACAACGGT TTAGGGATAG TGAGCTTTTT GATAGAGTGA AAATTGGCTA A
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| Protein sequence | MKIVKLTQVF IRSLARQTRA YTIQDSLCHG LGVKVMPDKP MQYVISRLID NRTRTRILAP
VSALTVKAAR EKATGQLQAW REEHTQPSMS ASPRFDVFVE QTWKPMIFEH WKPSTKRSVL
PALNRRLLAH FGRYPLHMIN HKMVQAWFDE ISKTRKGAAN RNLDTLQSVF KLALRQGHCL
TNPCIGIRQN KRRVLNRFLS VAEMQRLSVA LDECEAVGGS IAQCADVLRL LLLTGCRLSE
ITFLKGEYVR GNELHLPDSK TGAKVLYIGQ AAVDILSRYH CKANTELFPM KQGASTSLVQ
SLWLRLRKQI GVEDVRLHDL RHTFASYAVM DGCSIPMVAS LLGHKKVTMT LRYTHVGDDS
VEQASEVIGA VFKGIFTQPE PPKPLIPRTN ETPMPAVKVK QKRLPERKPT AKPKPKAVKK
VKQVKPLQKL PTLTKEELRA IQRFRDSELF DRVKIG
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