Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4718 |
Symbol | |
ID | 1172297 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4922525 |
End bp | 4923907 |
Gene Length | 1383 bp |
Protein Length | 460 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637346422 |
Product | sigma-54 dependent response regulator |
Protein accession | NP_720234 |
Protein GI | 24376190 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG2204] Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCCAGA TAGATAATAA CCTCAAGCCC CTTCCTTCCG CTGTGTCGGT CCTGATCGTT GATGACGAAC CAGGGATGCG CAGTTTTTTA AATAAGGCAC TCTCGAAAAA ATTCGCCTTA GTCGAAACTG CGGGCAGTAT TGAAGATGCT GAGCAGCTAC GTAGTCGCTG TCACTTCGAC TTATTGATTG TCGATATTCG TTTACCCGGT CGCTCGGGTA TTGAGTGGAG CGAAGCGTTA GATGAACAAG GTCGACGTTC CGATGTAATT TTTATGACCG GCTATGCGGA TTTAGAAGTC GCGATTAAAG CACTGCGCGC TGGCGCGTCT GACTTTATTA TGAAGCCATT CCACCTTGAG CAGATGATGT CTGCGGTTGA CCGCTGTATT GAGCGCCGCT TGCTTCGCCG TGAAAACTTA ATGCTGCGCC GTGAAGTGTC TATTGGCTAT TCCTCCACCA TTATTGGTAG CAGCGATGCG ATGAAGTCGG TTAAGCAAGT GATTGAACGT GTCGCACCAA CTAATGCGGT TGTGTTAATC CAAGGGGAAT CGGGCACGGG TAAAGAGTTA GTTGCGCGGC AATTACATTT ACTCAGCGGT CGCCAAGGGC CTTTTGTCCC TGTTAACTGT GGCTCGATAG CGCCTGAATT GCTTGAAAGT GAACTCTTTG GCCATACAGC AGGGGCCTTT ACTGGCGCCA AGGGTAATCG CGAAGGCTTA TTTAGTTTTG CCTCCGGCGG TACGATTTTC CTCGATGAAA TTGGCGAGAT GCCGCTCAAA ATGCAAACCG CGCTGCTCAG GGTGCTGGAG CAGAAGGCGA TTCGCCCAGT GGGCAGTGAA AAGGAAGTCA ATATTGATGT CCGAGTGATC GCGGCAACTA ACCGTACATT GGTGGATGAA GTTGAGGCGG GTAACTTCCG GCGCGATCTC TATTATCGTC TGAATGTGCT TGATATTTTA ATTCCACCGC TGCGTGATCG TCCGGAAGAT GTGGTCGAAT TGACCCACCA TTTTACCCGC CAATTGGCTG CAGAGTTAGG CGTGCGCGAA GTGGTGTGGA GCCATGAGGA TATGGTGAAA CTGCAACAAC ATGAGTGGCC GGGTAATATT CGCGAGCTAC GCAATATGAT TGAGCGCTGT ATTCTGCTTG GTAAGCCTCC GGCAGAGTAT TGGAAGCAAC AGGTGAAAAC TGAATCCTTG GCTTCCCAAG GTTATCCATT AGATTGGCCA CTAAAAGAAG TGGAAAAACA TCATGTGACT AGCGTAGTGG ATTTGCATTC TGGTAATAAA TCCGCAGCAG CTCGGGACTT AGGGGTTTCC CGTAAGACTT TAGATCGCAA GTATAAAGAA TGGTTTGGCG TTAGCGACGA GCAGGAGTTT TAA
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Protein sequence | MSQIDNNLKP LPSAVSVLIV DDEPGMRSFL NKALSKKFAL VETAGSIEDA EQLRSRCHFD LLIVDIRLPG RSGIEWSEAL DEQGRRSDVI FMTGYADLEV AIKALRAGAS DFIMKPFHLE QMMSAVDRCI ERRLLRRENL MLRREVSIGY SSTIIGSSDA MKSVKQVIER VAPTNAVVLI QGESGTGKEL VARQLHLLSG RQGPFVPVNC GSIAPELLES ELFGHTAGAF TGAKGNREGL FSFASGGTIF LDEIGEMPLK MQTALLRVLE QKAIRPVGSE KEVNIDVRVI AATNRTLVDE VEAGNFRRDL YYRLNVLDIL IPPLRDRPED VVELTHHFTR QLAAELGVRE VVWSHEDMVK LQQHEWPGNI RELRNMIERC ILLGKPPAEY WKQQVKTESL ASQGYPLDWP LKEVEKHHVT SVVDLHSGNK SAAARDLGVS RKTLDRKYKE WFGVSDEQEF
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