Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4669 |
Symbol | polA |
ID | 1172251 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4865820 |
End bp | 4868588 |
Gene Length | 2769 bp |
Protein Length | 922 aa |
Translation table | 11 |
GC content | 48% |
IMG OID | 637346376 |
Product | DNA polymerase I |
Protein accession | NP_720184 |
Protein GI | 24376141 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0258] 5'-3' exonuclease (including N-terminal domain of PolI) [COG0749] DNA polymerase I - 3'-5' exonuclease and polymerase domains |
TIGRFAM ID | [TIGR00593] DNA polymerase I |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGCCGACCA TAGCCAATAA CCCACTTGTT CTTGTGGATG GATCTTCTTA TTTATACCGC GCCTATTATG CGCCTCCTCA TCTGACAAAC TCAAAGGGCG AAGCAACTGG GGCAGTTTAT GGCGTAGTCA ATATGCTCCG CAGTTTATTG AGCCGTTACC AGCCTAGCCA TATTGCCGTG GTATTTGACG CTAAAGGCAA GACATTTCGC AATGACTTAT ACCAAGAGTA CAAAGCGCAT CGCCCACCCA TGCCCGATGA TTTACGCTCA CAAATCGAGC CGCTACACCG TATTATTCGC GCCTTAGGCT TGCCCCTCAT TTCCATACCC GGCGTAGAGG CAGATGATGT CATTGGCACT ATTGCTCGCC GAGCGAGCCG CGAGAATCGC GCTGTGCTCA TTAGTACGGG TGATAAAGAT ATGGCGCAAT TGGTTGATGA AAATATCACG CTAATCAACA CCATGACAGA TACCATCATG GGGCCAGAAG AAGTCGCAGC CAAATATGGT GTAGGCCCAG ACAGAATTAT CGATTTCTTA GCGCTGATGG GCGATAAGGC GGATAACATT CCTGGTTTAC CAGGTGTTGG CGAAAAAACC GCTTTAGCCA TGCTCACGGG TGCCGGAAGC GTGGCTAATC TACTTGCTGA ACCTGAAAAA GTCTCTGAAT TAGCTTTTAG GGGCTCAAAA ACGATGGCGG CGAAGATCAT CGATAATGCT GACATGCTAA GACTTTCCTA CGAACTGGCC ACCATTAAAA CCGATGTGGA ACTTGAGCAA GATTGGCATG AGCTTACCGC CAAACCCGCA GATCGAGACG AACTGATCAA ATGCTACGGC GAAATGGAGT TTAAGCGCTG GCTTGCCGAA ATTTTAGATA ATAAAGCACC AGCAACCATA GCGACGGCGA CTACCACAGT AGAAACCGAA GCAGACACTA CGCCAAGTCT CGCACTTGAA ACCCAATACG ACACGATTTT GACCGAAGCT CAGCTTGATG AGTGGATTGC CAAGCTAAAA CAAGCATCAC TGTTCGCCGT GGATACCGAG ACCACGAGCC TTGACTATAT GGTCGCCGAA CTGGTTGGCA TGTCCTTCGC CGTGGAAGCG GGTAAAGCTG CTTACCTGCC TTTAGCCCAC GATTATGTTG GCGCACCTCA ACAATTAGAT AAGCAGTTTG CGCTCGAAAA ATTACGCCCC ATTTTAGAAG ATGCCAAGCT TAAAAAAGTC GGTCAAAACC TTAAATATGA CATCAGTGTA TTGGCCAACG CGGGCATTAC ACTCCAAGGT GTTGCGTTTG ACACCATGCT CGAATCCTAT GTGTTTAATT CTGTTGCTTC ACGCCATGAT ATGGACGGTT TAGCACTCAA ATACCTAGGC CATAAAAATA TCGCCTTTGA AGATATTGCT GGCAAAGGAG CGAAACAGCT GACCTTTAAC CAAATTTCGT TAGAAACAGC TGCTCCCTAT GCGGCGGAAG ATGCAGATAT TACGCTACGC CTACATCAAC ACCTGTGGCC AAGGCTCGAA AAAGAAGCTG AATTAGCATC GGTCTTTACA GATATCGAAC TGCCACTGAT CCATATTCTG TCTGATATTG AGCGCCAAGG TGTCTTTATC GATAGCATGT TGCTCGGTCA ACAGAGTGAA GAACTCGCGC GTAAAATCGA TGAGCTTGAA ACTAAAGCCT ATGATATTGC AGGTGAAAAA TTCAACTTAA GCTCCCCAAA ACAGCTTCAA GTACTATTTT TTGAAAAGCT GGGCTATCCG GTCATCAAAA AGACACCTAA GGGCGCACCA TCCACCGCCG AAGAAGTGCT GGTCGAATTA GCATTGGATT TCCCTCTACC AAAGGTGATC TTAGAGCATC GCAGCCTAAC AAAATTAAAG AGCACGTATA CCGATAAGCT CCCCTTAATG GTGAATGCAA AAACTGGCCG AGTGCATACT AGCTATCATC AAGCGAATGC GGCGACGGGG CGTTTATCAT CGAGCGAGCC AAACCTGCAA AATATTCCGA TCCGAACCGT AGAAGGCCGT CGTATTCGCC AAGCCTTTAT TGCCCCAGAA GGGCGTAAAA TTTTAGCCGC TGACTATTCA CAGATTGAAT TGCGGATCAT GGCGCATTTA TCCCAAGATG CAGGTCTACT TAACGCTTTT GCCGAAGGTA AAGACATTCA CCGCGCCACC GCTGCCGAAG TGTTTGGCAC CGACTTTGAT AGCGTCACCT CAGAACAGCG TCGCCGCGCT AAGGCCGTTA ACTTTGGCCT TATCTATGGC ATGTCGGCTT TTGGATTAGC GCGCCAGCTC GACATTCCGC GCAACGAAGC GCAAACCTAT ATCGACACTT ACTTCGCCCG TTATCCAGGA GTATTAAGGT ATATGGAAGA AACGCGAGCA AGTGCGGCTG ATCTCGGTTA CGTATCAACA TTATTCGGTC GTCGCCTGTA TTTACCCGAA ATTCGCGATC GTAATGCAAT GCGTCGTCAA GCTGCCGAAA GGGCGGCCAT TAACGCACCA ATGCAAGGTA CTGCCGCAGA TATCATCAAA AAAGCGATGA TCAGTATTGC CGATTGGATT AAAACTGATA CCCAAGGTGA AATCGCCATG ATCATGCAAG TCCACGACGA ATTAGTGTTC GAGGTCGATG CCGATAAAGC CGAGACGCTC AAACAAAAAG TGTGCGAACT TATGGCTAAA GCGGCAAATC TGGATGTAGA ACTCCTAGCA GAAGCGGGGA TTGGTGATAA CTGGGATGAG GCCCACTAA
|
Protein sequence | MPTIANNPLV LVDGSSYLYR AYYAPPHLTN SKGEATGAVY GVVNMLRSLL SRYQPSHIAV VFDAKGKTFR NDLYQEYKAH RPPMPDDLRS QIEPLHRIIR ALGLPLISIP GVEADDVIGT IARRASRENR AVLISTGDKD MAQLVDENIT LINTMTDTIM GPEEVAAKYG VGPDRIIDFL ALMGDKADNI PGLPGVGEKT ALAMLTGAGS VANLLAEPEK VSELAFRGSK TMAAKIIDNA DMLRLSYELA TIKTDVELEQ DWHELTAKPA DRDELIKCYG EMEFKRWLAE ILDNKAPATI ATATTTVETE ADTTPSLALE TQYDTILTEA QLDEWIAKLK QASLFAVDTE TTSLDYMVAE LVGMSFAVEA GKAAYLPLAH DYVGAPQQLD KQFALEKLRP ILEDAKLKKV GQNLKYDISV LANAGITLQG VAFDTMLESY VFNSVASRHD MDGLALKYLG HKNIAFEDIA GKGAKQLTFN QISLETAAPY AAEDADITLR LHQHLWPRLE KEAELASVFT DIELPLIHIL SDIERQGVFI DSMLLGQQSE ELARKIDELE TKAYDIAGEK FNLSSPKQLQ VLFFEKLGYP VIKKTPKGAP STAEEVLVEL ALDFPLPKVI LEHRSLTKLK STYTDKLPLM VNAKTGRVHT SYHQANAATG RLSSSEPNLQ NIPIRTVEGR RIRQAFIAPE GRKILAADYS QIELRIMAHL SQDAGLLNAF AEGKDIHRAT AAEVFGTDFD SVTSEQRRRA KAVNFGLIYG MSAFGLARQL DIPRNEAQTY IDTYFARYPG VLRYMEETRA SAADLGYVST LFGRRLYLPE IRDRNAMRRQ AAERAAINAP MQGTAADIIK KAMISIADWI KTDTQGEIAM IMQVHDELVF EVDADKAETL KQKVCELMAK AANLDVELLA EAGIGDNWDE AH
|
| |