Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4617 |
Symbol | dinF |
ID | 1172200 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4810765 |
End bp | 4812132 |
Gene Length | 1368 bp |
Protein Length | 455 aa |
Translation table | 11 |
GC content | 49% |
IMG OID | 637346326 |
Product | DNA-damage-inducible protein F |
Protein accession | NP_720133 |
Protein GI | 24376090 |
COG category | [V] Defense mechanisms |
COG ID | [COG0534] Na+-driven multidrug efflux pump |
TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
|
|
Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
| |
Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
| |
Sequence |
Gene sequence | ATGACTACTG CAAAATCCAC TGCACTCGCG CTGCTATTTA ATGGCACCAA GAATCGCCAA CTGTTCGCGC TTGCCCTGCC GATGATCCTC TCCAATATCA CGGTTCCGCT ATTGGGATTG GTAGATACGG CTGTCATCGG CCATTTGAGT GACGCCTATT ATTTAGGGGG CGTCGCACTC GGGTCAACGA TTATCACATT AATCATTTGG TTATTAGGCT TTTTACGTAT GGCGACCACC GGCTTAGTCG CACAGGCCTA TGGTGCAAAT GATATTAACG CCCAATTAAA ACTGTTGGTT CAAGGCGCCA TGCTGGCGAC AGGACTTGGC ATCGCGATGA TCCTGCTACA AGTCCCGCTT CTCAGTTTAG CGCTCAGCTT CTCCGAGGCG AGTGTAGAAG TTGAGCGTTA TTGCCGAGAA TATTTTCAAA TTCGGATCTG GTCTACACCC TTCGCCCTGC TCAATTTAGT CATGCTGGGC TGGCTCCTTG GCCGGCAACA ACCCAAGGCG GCGATGTGGC AGTTGATCTT CGCCAATGTG GCTAACATTA TCCTCGATGT GCTGTTTGTA TTAGGATTCG GCTGGGGTGT AAAAGGCGCA GCACTCGCCT CAGTATTTGC CGATATCACC GCCTTTAGCG TTGCGCTCTA CATGGTATTA CAGCAAGTTA AGTTAATACC AAACTACCCA TTTGCCGAAA TCCGCGCCCA TATCCGCTTT ACTGGTTTTG GCCAGTTGCT TCGGCTCAAT AGTGATATTT TTATCCGCAG CCTATGCCTG CAAACTGCCT TCGCCTTTAT GACCTTTCAC GGCGCAGGCC TTGGTGACAA TACCGTCGCA GCCAATGCGG TGTTATTGAA TTTACTGCTA TTAATCTCCT ATGCCCTCGA CGGCATCGCC TATTATGCCG AGGCAGAAGT GGGCAAAGCC TATGGTCAAA AGCGCGCGCA GCAATTGCAT GAAGCCGTGG TGCTGGCCTG GTGTTGGTCT GCCATCACGG CTCTTGGGTT TACCCTGATA TTTAGCCTTT GGGGAAGCCA TATTATCGAA CTGTTGACCA GTATTGATGA GGTCAGAACC ACAGCACAGA TTTATCTAAT TTGGTTGGTA TTGCTACCGC TTTGGTCTTT TAGCTCTTAC CTATTCGATG GCGTTTATAT CGGTGCGGCG CAGGGCAAAG TGATGCGTAA CAGCATGATA ATTGCAACAT TTGGCGCCTT CTTTCCGACA TGGTATTTAC TACAATCGCT ATTGCCTTCT GAGCAGGCTA ACCATGCCCT CTGGGCGGCC ATGACGGCCT TTATGTTAAT GCGTAGCCTG ACCCTTGCTG CACATTATCG CTTTAGTAAG ACATTTATTG TTAGTTAA
|
Protein sequence | MTTAKSTALA LLFNGTKNRQ LFALALPMIL SNITVPLLGL VDTAVIGHLS DAYYLGGVAL GSTIITLIIW LLGFLRMATT GLVAQAYGAN DINAQLKLLV QGAMLATGLG IAMILLQVPL LSLALSFSEA SVEVERYCRE YFQIRIWSTP FALLNLVMLG WLLGRQQPKA AMWQLIFANV ANIILDVLFV LGFGWGVKGA ALASVFADIT AFSVALYMVL QQVKLIPNYP FAEIRAHIRF TGFGQLLRLN SDIFIRSLCL QTAFAFMTFH GAGLGDNTVA ANAVLLNLLL LISYALDGIA YYAEAEVGKA YGQKRAQQLH EAVVLAWCWS AITALGFTLI FSLWGSHIIE LLTSIDEVRT TAQIYLIWLV LLPLWSFSSY LFDGVYIGAA QGKVMRNSMI IATFGAFFPT WYLLQSLLPS EQANHALWAA MTAFMLMRSL TLAAHYRFSK TFIVS
|
| |