| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4583 |
|---|
| Symbol | rpoH |
|---|
| ID | 1172168 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Shewanella oneidensis MR-1 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_004347 |
|---|
| Strand | - |
|---|
| Start bp | 4778232 |
|---|
| End bp | 4779089 |
|---|
| Gene Length | 858 bp |
|---|
| Protein Length | 285 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637346294 |
|---|
| Product | RNA polymerase factor sigma-32 |
|---|
| Protein accession | NP_720099 |
|---|
| Protein GI | 24376056 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0568] DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32) |
|---|
| TIGRFAM ID | [TIGR02392] alternative sigma factor RpoH
[TIGR02937] RNA polymerase sigma factor, sigma-70 family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | n/a |
|---|
| Plasmid unclonability p-value | n/a |
|---|
| Plasmid hitchhiking | n/a |
|---|
| Plasmid clonability | n/a |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGACCTTTC AAACGCAATC AATGGCACTA ACCGTCCCTC AGGGCAGTAG TAGTTTAGAG
GCTTATATCC ATTCAGTGAC TAGCATGAAC ATGTTAGACG CTGAGACTGA GTATGAGTTA
GCCAAGCGTT TGCAGGAAAC CGGTGATCTG CAAGCGGCAA AGCAACTGAT TATGTCGCAT
TTACGCTTTG TGGTGCATGT AGCTAAAGGT TATGCCGGTT ACGGTCTGCC ACAGGCGGAT
TTGATCCAAG AAGGCAACAT TGGTCTGATG AAAGCGGTTA AGCGCTTCGA TCCCGATGTT
GGCGTTCGTC TGGTGTCTTT TGCTGTGCAC TGGATCAAGG CTGAAATTCA TGAATATGTG
CTCAAAAACT GGCGCATTGT TAAAGTCGCT ACCACCAAAG CACAACGTAA GTTGTTTTTT
AATATTCGTA AAGCGAAAAC ACGCTTAGGT TGGTTTAGCG ATGATGAAGT CACCATGGTG
GCGGAAAACT TAGGTGTATC AAAGGCTGAT GTGACTGAAA TGGAGTCACG TATGGCTGCG
CAGGATCCTG CGTTTGATCT TAGTAGTGAC AACGATGATG AGCATGATTT TGCCCCTGTG
CATTACCTCG AAGATCACTC ATCTGATTTA GCCGAAAACA TCGAAAATGA TAACTGGGAA
TCCAATGCTC AAGGTCGTTT ATTATCGGCC ATCAAAACCC TAGATGAGCG TAGTCAGCAT
ATTCTGCGCG CCCGTTGGTT AGATGATGAT AAAACCACAC TGCAGGAATT GGCTGAAACC
TATCAAGTAT CGGCTGAACG TATTCGCCAA CTTGAAAAAA ATGCCATGAA TAAGCTTAAG
GCTTGTATGG AAGCTTAA
|
|---|
| Protein sequence | MTFQTQSMAL TVPQGSSSLE AYIHSVTSMN MLDAETEYEL AKRLQETGDL QAAKQLIMSH
LRFVVHVAKG YAGYGLPQAD LIQEGNIGLM KAVKRFDPDV GVRLVSFAVH WIKAEIHEYV
LKNWRIVKVA TTKAQRKLFF NIRKAKTRLG WFSDDEVTMV AENLGVSKAD VTEMESRMAA
QDPAFDLSSD NDDEHDFAPV HYLEDHSSDL AENIENDNWE SNAQGRLLSA IKTLDERSQH
ILRARWLDDD KTTLQELAET YQVSAERIRQ LEKNAMNKLK ACMEA
|
|---|
| |