Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4552 |
Symbol | |
ID | 1172139 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | + |
Start bp | 4747944 |
End bp | 4750061 |
Gene Length | 2118 bp |
Protein Length | 705 aa |
Translation table | 11 |
GC content | 46% |
IMG OID | 637346265 |
Product | sensory box protein |
Protein accession | NP_720069 |
Protein GI | 24376026 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGATTCGAT GGCAGCACTT GCTAAATAAA CTCACAACAG ATGACCCACT GTTGCAAGAA AAGCTCTCTG TTTGGCGAAT CCATCCCCAT AAAACACCCC TCGCGCTGAT CCAAGGTTTT AGTTTTATCA GTGCAAACAG TGCCACCCTC GACTACTTTG GCACCGAATA TGATACGTTT GTCAATGCAA CTCCCTATGA CTTTTCGCCT AGAATTCAAT CATCTGGGCG TAACAGCGTT GAATTTGCGC GGGAGATGAT TCTAGAAGCC GTTTCAGGGA TTAATGTCGA ATTCAGTTGG CTCCACCTTA ATCAACAAGG GAACGAACTG CCTACTCGGG TGAACCTCTA TCGCTGCTAT CTACAGCAAC AGCCTGTTGT ACTGGTCGAG TTACAAGCGT TAAACCGTAG AACCCAAGTC AGGCCAGCCA TTGCCGACGG CTTTGCCCAT ATTCCGAAAG AAATCCTCTC GACGACCTTA GAAGAAAGTG CCGAAGCGGT TTATATCACT GATATCGATA ATAAAATTTT GGCGGTCAAC AAGGCGATGT GCCGTATTTG CGGTTATAGC GCAGAGCAAT TAATCAATAA AACCCCATTT TTTTTAGAAG CCAGCCCACT CAATGCCAGT GACGAAAGCG AGTGCCTGCA AGCTTTAAAA CAGCGTGGCT TTTGGCAGGG CGAAACCTTA AAACAACGTT CTGATGGCAG CACATTTCCA GCATGGCAAA GTAGTCGCCG CATCGCTGCA GATGGTCTTG AGTATCATGT AAATATCTTT AGTGATATCA GCACTAAAAA ACTGCTCGAA ACACAACTCA CTACTCGTGC CATGTATGAC ACCTTAACGG GGTTACCAAA TCGTTTCCAT CTTAAACAGA TCCTTAATGG CGCCCTCGAC AAACTAAAGG ACGATCCCCT CGCCCTCGGT GCACTGATGT TTTTGGACCT CAACGGTTTT AAAAATATCA ATGACAGTTT TGGCCATTCC ATGGGCGATA GAGTATTGCA ACTGGTCGCA GCACGCTTAG AAGCCGGTTG CATCGAAAAA GCGGATATTG CCCGCATGGG CGGCGACGAA TTTACCCTAG TGCTGCAGGA TTGTAGTTGC AAGGAAGAAA TCCAACTGTT TGCCGAGCAA ATTTTAAGCT TGTTCGACAG CCCGTTTGAA ATTGAAGGCC AAAAGTTTTT CCTCGGCACT AGCATTGGCA TCGCGCTTTT TCCAACACAC AGTGATCAAG CTGGCCAACT GATTAGCTTG GCCGACACAG CCATGTATTG CGCGAAAAAA AACCAGCCTC ATTTAGTGTT TTATGATAAA TCCATGAGCC AAGCTGCCGA GCTTAAATTA AAACTTATCA ATAACCTAAG ACATGCCCAC AGTTTAAAGC AGTTCAAACT TGCCTATCAG GCCATAGTCG ATTTGCATAC CAATAAACCG ATTGCTGCCG AGGCCCTGCT ACGTTGGCAA AAATCCCCCA CAGAGCATTA TGAAGCCGCT GAGTTTGTGC CTTTGCTGGA GGAAACGGGC CTGATTGTCA GCATTGGGCA ATGGGCACTC GAACAAGCCT GTAAGCAGGC ATCAGTATGG CGAGCACAAT ATCAGCCCGA TTTTAAGATT TCAGTTAACG TATCGCCATT GCAATTGGAG CATGTGGACT TTGTAGGTCA AGTGGTTAAC GCGCTTGAAA TGGTTGCCCT ACCCGCTGAA GCCTTAATTT TAGAAATCAC TGAATCCGCG CTGCTGCGTC AACCTGAACA GGCTCGTCAT ACACTTGAAC GAATTAAAGC CTTAGGTGTT GGCATTGCTA TTGATGACTT TGGCACAGGG CTGTCTTCGC TCAGCCGTTT AGGAACCTTA CCCATTGATA GCGTGAAGAT TGATGCTGAA TTTGCCCTCA GATTGACGGA TGCCTCAGGA CAAAAACTCT GCCATGCCAT AGTGCAATTA GCACAGGCAC TCGGCATTCA CTTTGTAGCG GAAGGCATCG AGACCCAGCA GCAAAAAGAT ATTATTACCC ATATGGGACA AGGCTTTGCC CAAGGCTTTT TATTTGGTTA TCCAAGTTAT GTTGAGCAGT TTACTGAGTC CTATTTGGCC GAGAAATGTA TTGCTTAA
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Protein sequence | MIRWQHLLNK LTTDDPLLQE KLSVWRIHPH KTPLALIQGF SFISANSATL DYFGTEYDTF VNATPYDFSP RIQSSGRNSV EFAREMILEA VSGINVEFSW LHLNQQGNEL PTRVNLYRCY LQQQPVVLVE LQALNRRTQV RPAIADGFAH IPKEILSTTL EESAEAVYIT DIDNKILAVN KAMCRICGYS AEQLINKTPF FLEASPLNAS DESECLQALK QRGFWQGETL KQRSDGSTFP AWQSSRRIAA DGLEYHVNIF SDISTKKLLE TQLTTRAMYD TLTGLPNRFH LKQILNGALD KLKDDPLALG ALMFLDLNGF KNINDSFGHS MGDRVLQLVA ARLEAGCIEK ADIARMGGDE FTLVLQDCSC KEEIQLFAEQ ILSLFDSPFE IEGQKFFLGT SIGIALFPTH SDQAGQLISL ADTAMYCAKK NQPHLVFYDK SMSQAAELKL KLINNLRHAH SLKQFKLAYQ AIVDLHTNKP IAAEALLRWQ KSPTEHYEAA EFVPLLEETG LIVSIGQWAL EQACKQASVW RAQYQPDFKI SVNVSPLQLE HVDFVGQVVN ALEMVALPAE ALILEITESA LLRQPEQARH TLERIKALGV GIAIDDFGTG LSSLSRLGTL PIDSVKIDAE FALRLTDASG QKLCHAIVQL AQALGIHFVA EGIETQQQKD IITHMGQGFA QGFLFGYPSY VEQFTESYLA EKCIA
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