| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4425 |
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| Symbol | |
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| ID | 1172022 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4615800 |
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| End bp | 4617107 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637346144 |
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| Product | GGDEF family protein |
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| Protein accession | NP_719947 |
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| Protein GI | 24375904 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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| |
Sequence |
| Gene sequence | TTGTTTGCAA CCATTTCATT ATCAACTGCT TTGCTTAAGT CGCTTTCGAA CTCGCCTTCA
ATTAACATTC AACCCTTTCA ACAAAAATGC CAAAAGCCAT CTATAGTTAA AGGAAAATTG
AACGTTGCCA TGGAATTTGA TCCCCAAGCC CTTTTACTCA TTAAATTTAT CTGTCTGCTG
ACTGGCACAG CAGCCATTGC ATGGGGGTTA ATCGCTCAGC CATTAAAAAT TGCTACCTTA
GCCAGCATGC GCTTTTCCCT TGCCAATATT TGTGTTCTCC TCGGTATTAC ACTCAACACC
CAGCGAACAG AATCAGATAG TTACTTCTAC TGGTTTTGCG CAGATATCGC CATTTTACTC
GGATTTATTA TGCTGCGTTG GGGCACACAG TACCTGTTCC GATTGCAGCA CAGCGCAAGG
TTCGATCTCA CTACGCTTGC GATCACAGCG GTTCTGATGT TGATGGTTCC GCCCAATTTT
CATTCTGAGC CAGTGCTCGC AATGCTTTTC TCGGCAAATG CCGCCTTATC CTTTGTGATG
CTCACTCGAG ATAATTATTA CGCCATCCGC AGAGAAACAG GCAATAAGGT CGCTATTGCT
ATGGTCATGC CACTAATTGC TATGGTCATC ATCTTCGCGA TTCGATTTTT TATCGCCCTG
TTTGCACCCC ATGAAACCCA GACCTTTATT GCCATACACA CGGTTGAAGC CATTCCTATG
CTATGGTTTT ATGTGTTCTT AGCCTTACTT ATCAATATTG TAATGATAGG TAATGCGATG
ACTCGCCTTG TCAGTAAAAT CAGAGTATTA GCCGAAAAAG ATCAGCTCAC AGGACTTTGG
AATCGACGCG CAATGCAAAA AAGGCTCAGC CACATCCACC AACGCTGGCA AAAAAAAGCT
GAGCCCTATA GCGTGATCTT GCTCGATCTC GACCACTTCA AACACATAAA CGATCACTAT
GGCCACGATG TTGGCGACAT CGCCCTGCTG AGTGCGGCAA GATTATTTAG CAGTGCATTA
CGAGAACACG ATGTCCTCTG TCGTCATGGT GGGGAGGAGT TTTTAGTGTT ACTACCTGCC
ACAAGCTCGC AAGCAGCCAG AGTTGTTGCG GACAAATTAC ATCGGATACT GAGGGAAAAC
CCGATTAACT GGCAGGATAA AAAAGTCCAA CTCTGTGCAA GTGTTGGTTA CGCAACGATT
TATCAAGGAT GTCAACCAGA CAAACTGCTG ATTGAGGCCG ATCATGCCAT GTACCGCGCG
AAATCCGAAG GGAGGGACCG GATCTGCCAA GCCTTAACCA CCCAATAA
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| Protein sequence | MFATISLSTA LLKSLSNSPS INIQPFQQKC QKPSIVKGKL NVAMEFDPQA LLLIKFICLL
TGTAAIAWGL IAQPLKIATL ASMRFSLANI CVLLGITLNT QRTESDSYFY WFCADIAILL
GFIMLRWGTQ YLFRLQHSAR FDLTTLAITA VLMLMVPPNF HSEPVLAMLF SANAALSFVM
LTRDNYYAIR RETGNKVAIA MVMPLIAMVI IFAIRFFIAL FAPHETQTFI AIHTVEAIPM
LWFYVFLALL INIVMIGNAM TRLVSKIRVL AEKDQLTGLW NRRAMQKRLS HIHQRWQKKA
EPYSVILLDL DHFKHINDHY GHDVGDIALL SAARLFSSAL REHDVLCRHG GEEFLVLLPA
TSSQAARVVA DKLHRILREN PINWQDKKVQ LCASVGYATI YQGCQPDKLL IEADHAMYRA
KSEGRDRICQ ALTTQ
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