Gene SO_4408 details

Gene Information

• Locus tag: SO_4408
• Symbol: bipA
• ID: 1172007
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: -
• Start bp: 4600865
• End bp: 4602676
• Gene Length: 1812 bp
• Protein Length: 603 aa
• Translation table: 11
• GC content: 48%
• IMG OID: 637346130
• Product: virulence regulator BipA
• Protein accession: NP_719931
• Protein GI: 24375888
• COG category: [T] Signal transduction mechanisms
• COG ID: [COG1217] Predicted membrane GTPase involved in stress response
• TIGRFAM ID: [TIGR00231] small GTP-binding protein domain; [TIGR01394] GTP-binding protein TypA/BipA

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGCTAGAGA ATTTACGTAA CATCGCCATT ATTGCGCACG TTGACCATGG CAAAACGACC 
CTGGTTGACA AGCTGCTGTC GCAATCAGGA ACCCTTGCAA CCCGGGGAGA AGCTACTGAG 
CGGGTGATGG ACTCCAACGA TCTTGAAAAG GAGCGTGGAA TCACGATTCT GGCAAAGAAC 
ACTGCCATCA AGTGGAACGA CTACCGCATT AACATCGTAG ACACCCCTGG CCACGCCGAC 
TTCGGTGGTG AGGTTGAGCG TGTTCTGTCT ATGGTTGACT CAGTATTGTT GCTGGTTGAT 
GCCGTTGATG GTCCAATGCC ACAAACTCGC TTCGTAACCA AAAAAGCGTT TGCCCAAGGC 
TTAAAGCCAA TCGTTGTTAT CAACAAGATT GACCGTCCAG GTGCTCGCCC TGATTGGGTT 
ATCGACCAAG TATTCGACCT ATTCGATAAC TTAGGTGCGA CCGACGAACA ATTAGATTTT 
CCAATCGTTT ATGCTTCTGC ATTAAACGGT TTTGCAACCT TAGATCCAGA TGTTGTCAGC 
GAAGATATGA CGCCACTGTT TCAGACTATC GTTGAAAAAG TGTCATCACC TGATGCTGAT 
GCGGATGGTC CATTCCAGAT GCAAATTTCT CAGCTCGATT ACAACTCTTA CGTGGGTGTT 
ATCGGTGTGG GTCGCATTAA CCGTGGTAGC ATCAAGACTA ACCAACAGGT GAGCGTGATC 
GGTGCCGACG GTAAAGTACG CAACGGTAAA ATGGGCCAAG TATTAGGTTA CATGGGCTTA 
GAGCGTACCG AAGTTGATGT AGCAAACGCG GGCGATATCG TTGCGATTAC TGGTTTGGGT 
GAGCTTAAAA TTTCGGACAC AGTGTGCGCC GCTGGCAATG TAGAGGCGAT GCCGCCTTTA 
TCTGTTGACG AGCCAACGCT GACCATGACC TTCCAAGTCA ACACTTCACC TTTTGCGGGT 
AAAGAAGGTA AGTATGTGAC TTCACGTAAC ATTCTTGAGC GTCTGCAACA GGAATTAGTG 
CACAACGTGG CACTGCGTGT TGAAGAAACC GACAGCCCAG ACCGTTTCGC GGTATCTGGT 
CGTGGTGAAT TACACTTATC TATCCTGATC GAAAACATGC GTCGTGAAGG TTACGAATTA 
GCAGTTTCTC GCCCAGAAGT TATCTTAAAA ACCATCGATG GTGAACTGTG TGAGCCATTT 
GAAACTCTGA CCGTTGACGT TGAAGAAGAA CATCAAGGGA CAGTGATTGA GAAGCTGGGT 
ATCCGTAAAG CTGAAATGAA AGATATGCAG CTTGACGGTA AAGGTCGCGT GCGCGTTGAC 
TTTGTTATCC CAAGCCGTGG CTTAATCGGT TTCCAAACAG AGTTCTTAAC AGCAACGTCA 
GGTACCGGTT TGATTTACCA CTCATTCGAT CACTACGGTC CACATAAAGG TGGCGACATT 
GGTCAACGCG CTAACGGCGT ACTGATCTCT AACGCAACGG GTAAGGCGCT GACATTCGCA 
CTGTTCGGTC TACAGGACCG CGGTCGTCTG TTTATTGGCC ACGCTGCTGA AGTTTACGAA 
GGTCAAGTTG TGGGTATTCA TGCTCGTTCA AACGATCTGA CAGTTAACTG TCTGAAAGGT 
AAGCAGCTGA CTAACATGCG TGCTTCTGGT ACTGACGAAG CTCAGGTTCT GACTACGCCA 
ATCACTTTAA CGCTTGAGCA AGCGCTTGAG TTTATTGATG ATGACGAATT AGTTGAAGTG 
ACACCTAAGA GCATCCGTGT TCGTAAGAAA CACTTAACTG AAAACGACCG TAAGCGCGCT 
AGCCGCGGCT AA 

 

Protein sequence

MLENLRNIAI IAHVDHGKTT LVDKLLSQSG TLATRGEATE RVMDSNDLEK ERGITILAKN 
TAIKWNDYRI NIVDTPGHAD FGGEVERVLS MVDSVLLLVD AVDGPMPQTR FVTKKAFAQG 
LKPIVVINKI DRPGARPDWV IDQVFDLFDN LGATDEQLDF PIVYASALNG FATLDPDVVS 
EDMTPLFQTI VEKVSSPDAD ADGPFQMQIS QLDYNSYVGV IGVGRINRGS IKTNQQVSVI 
GADGKVRNGK MGQVLGYMGL ERTEVDVANA GDIVAITGLG ELKISDTVCA AGNVEAMPPL 
SVDEPTLTMT FQVNTSPFAG KEGKYVTSRN ILERLQQELV HNVALRVEET DSPDRFAVSG 
RGELHLSILI ENMRREGYEL AVSRPEVILK TIDGELCEPF ETLTVDVEEE HQGTVIEKLG 
IRKAEMKDMQ LDGKGRVRVD FVIPSRGLIG FQTEFLTATS GTGLIYHSFD HYGPHKGGDI 
GQRANGVLIS NATGKALTFA LFGLQDRGRL FIGHAAEVYE GQVVGIHARS NDLTVNCLKG 
KQLTNMRASG TDEAQVLTTP ITLTLEQALE FIDDDELVEV TPKSIRVRKK HLTENDRKRA 
SRG