Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4358 |
Symbol | dmaA-2 |
ID | 1171961 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4551016 |
End bp | 4553604 |
Gene Length | 2589 bp |
Protein Length | 862 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637346085 |
Product | anaerobic dimethyl sulfoxide reductase, A subunit |
Protein accession | NP_719882 |
Protein GI | 24375839 |
COG category | [C] Energy production and conversion |
COG ID | [COG0243] Anaerobic dehydrogenases, typically selenocysteine-containing |
TIGRFAM ID | [TIGR01409] Tat (twin-arginine translocation) pathway signal sequence [TIGR02166] anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAAAGAC GTGCATTTTT GAAAATGTCG GCCTCATGTG CGGCTGCTGC TACCGTTGTG GGTTGTGGTT CTGATAAAAA TCCAGTATTA AAGCCAGAGG TATCGCCTGA GCAGGTGCCT GAAATATCCA AGCTTTCAGC ATGTATTGGT AATTGTTTTC AGACTTGTCC ATTAAGAGTT TATAGTCGCA ATGGCATTAT TACACGAATT GAATCTGAAA GCGGTGGTGA TATCAAATTT GTGGATAACT GGAGTGTCGA TGGTGCTCAT CATGAAATTC GCCCTTGTTT AAAAGGTCGT GCACAAAAAC AAAAGGCTTA TAGTGCCGAT CGTGTAAAAT ATCCCATGAA GCGTGTTGGA CCAAGAGGCA GTGGCCAATA TGTCCGCATT AGTTGGGATG AAGCTATTAA TACCGTTGCC CAAGAGTTAT CCACTAAGAT TACTACTTAT GGTGCACAAT CCATTTATTT ACCCGTAGCA ACCGGAGATT ATGATTATCA AGTCGATGGC ATGTATGCGG CAATGATGTT CTTGCATGAA ATAACCAAGA AGAAAATTCC ACTTTATATT CCAGAGATGG ATTTTACGAT GGAGTTAGAT GCATCTGGCT ATCTCATGTA TCACGATAGT TATTCGGCCG CGCAGATGAA AGATGCGGTA AAGAGCACCT TTGGTTGGGA CGATCTGTGG GGAACGGGGA ATACCTTACT CGATGTCAAA AATGGCACCG ATTTGATGAT TTGTTTTGGT TATAACCCGA TGGAAAGTCG GATGGGCGGC GCGGGTTCTG CTTACGATTA CACTAATCTG AAGCGTCAAT TTGGATTTAA GACTATTTAT ATCGAACCAC GTTATACCGA TACTATGGTG GTTTGTGATG ATCAGTGGGT CCCTATTCGC CCAGGTACCG ATGCAGCGCT TGCTGAAGCA ATTGCCTATG TATGGATTGC TGAGATGGAT GAAGCGCCGC TGGATATGGC ATTTTTGCAG AGTAAAGTTT ATGGCTATGG CGCAGAAGCG GCTTTCGATC ATTATCCTGA GTTGCCATTA GCAAAAAGTT ATAAGGGGCA TATTTTAGGG CTAGATGATG GCCAAGCTAA GACACCCGAA TGGGCAGCAG CAATTACGGG GATTCCTGTC GATACCATTC GCGCACTGGC CAGTGAAATT GCGGCGGCAA AAACACCGTT CTTTATTCAA GGTTGGGGTA TTCAGCGTGC CCAAAATGGT GAAAATGCCG CCCGTTCATT ATTTATGTTG CCAATTTTGC TGGGCAAGGT TGGTGATAAA GGCACCAATT TCTGCTCTGT ACCTGGCGCC AAAACTTACG CCAAACCGAT TGTTGCAGGG ATGGAAGCCG ACAGTGTCGG TAATAGTGTG GGGTCAGCTG TCATTAATGG TACAGAATTT ACCATTCCTG GCTATAAATG GTTAGAAGGG GTTCAGCGTC CACTTAATTC TCGGGATGAT GGTCTGCGAC ATATGCTCGG GGAAGAGCAA AAAAAGGATC ACGATAATAT TCTCGAGTTG AAAAATCCGA TTAAGTTTAT TTTTGGTAAT GCCTGTGGCA CGACATTAAA TCAAACTGCA GATATTAATC ATACTTTAGA TATTCTTAAT AATGCGCCTG AAGCTCAGGA TCTGTTTATT TTGGCGATAG ATCATATGTT TTCTCCGAGT GCAAAAATGG CGGATATCAT TTTACCTTGT ATTACTAACT TAGAAAATTC TGATATTGTG ACGAATAAGT TAGATCATGA TTCGGGAATG ATGGTGTATT CCTATGTGTT TGAACGTGCT ATTGAACCTA TGTATGAAGC CAAAAGTACT TGGGAGATTT GTCGATTATT AGCGGCACGA ATGGGTGTTG AGCACTCTTA TGCTCGCTTA AAAACGCAAG ATGAATGGGT TAAATGGAGT TTTGAGCATT ACGCTAAAAA AGTGCCTAAT TTATATAATC CAGAAGATAC CTATGAGTCG GTATTAGGCC GCAGTCCTGT GCGCCGTATT GCCTCTGAAA ATCCATTATT TAAAGGATTG CGTGAATTTA AATATGGTGG CGTAACCTTG AATACTCCTT CTAAAAAAAT TGAGGCTTAT TCTTTAACAT TATTAAATCG CACTCGATTT GAAAAGTTTG AAGAAACAGA GACCAGCTTT ATTGGGAAAT ATATTCCGGC AACTGAAGGC GCTGAGGATA ATGAGTTTGC TGCAGAATAT CCGTTCCAGT TGATAAGTTG GCATCATAAG GGGCGGGTGC ATTCAACTCA TGCTAATTAT CCTTGGTTAA AAGAAGCCAA TGATCAAGTG GCGTGGATTA ATCCACTTGA TGCGCAGCGC TATGGTGTCG TTAACGGCAA AAAAATGACC TTGACCAACC CTCGCGATGC AAAAATGGTG ATCACCGCCA AAGTCACTAC GCGAGTCATG CCCGGCGTGA TTGCCATGGG GCATGGGGCA TGGCATCAAC CGGATGCGAA TGGGGTCGAT CATGGCGGTA GTGTCAACGT GCTAGTTAGT CGCAAAGCTA GCCCGACAGC GCGTGGGATC CCCGCCAATA CTGCGCGTAT CAGAATTGTT CAGGCTTAA
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Protein sequence | MKRRAFLKMS ASCAAAATVV GCGSDKNPVL KPEVSPEQVP EISKLSACIG NCFQTCPLRV YSRNGIITRI ESESGGDIKF VDNWSVDGAH HEIRPCLKGR AQKQKAYSAD RVKYPMKRVG PRGSGQYVRI SWDEAINTVA QELSTKITTY GAQSIYLPVA TGDYDYQVDG MYAAMMFLHE ITKKKIPLYI PEMDFTMELD ASGYLMYHDS YSAAQMKDAV KSTFGWDDLW GTGNTLLDVK NGTDLMICFG YNPMESRMGG AGSAYDYTNL KRQFGFKTIY IEPRYTDTMV VCDDQWVPIR PGTDAALAEA IAYVWIAEMD EAPLDMAFLQ SKVYGYGAEA AFDHYPELPL AKSYKGHILG LDDGQAKTPE WAAAITGIPV DTIRALASEI AAAKTPFFIQ GWGIQRAQNG ENAARSLFML PILLGKVGDK GTNFCSVPGA KTYAKPIVAG MEADSVGNSV GSAVINGTEF TIPGYKWLEG VQRPLNSRDD GLRHMLGEEQ KKDHDNILEL KNPIKFIFGN ACGTTLNQTA DINHTLDILN NAPEAQDLFI LAIDHMFSPS AKMADIILPC ITNLENSDIV TNKLDHDSGM MVYSYVFERA IEPMYEAKST WEICRLLAAR MGVEHSYARL KTQDEWVKWS FEHYAKKVPN LYNPEDTYES VLGRSPVRRI ASENPLFKGL REFKYGGVTL NTPSKKIEAY SLTLLNRTRF EKFEETETSF IGKYIPATEG AEDNEFAAEY PFQLISWHHK GRVHSTHANY PWLKEANDQV AWINPLDAQR YGVVNGKKMT LTNPRDAKMV ITAKVTTRVM PGVIAMGHGA WHQPDANGVD HGGSVNVLVS RKASPTARGI PANTARIRIV QA
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