| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4318 |
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| Symbol | rtxB |
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| ID | 1171923 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4503564 |
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| End bp | 4505744 |
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| Gene Length | 2181 bp |
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| Protein Length | 726 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637346044 |
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| Product | toxin secretion ATP-binding protein |
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| Protein accession | NP_719843 |
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| Protein GI | 24375800 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG2274] ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain |
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| TIGRFAM ID | [TIGR03375] type I secretion system ATPase, LssB family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCCTGTTA CAGCGTCTGA AAAGGTTGAG CAGTGGACAA TTTCTGCATC ACAGCGAGTT
ATTGTTGACC CACTGCTAGA TTGTTTAGTG CTTCTTACTG AACATTTTGG TAATCCATGC
TCAAGTGATT CACTTGCGGC GGGCTTGCCT TTGTCTGGAG CAGTGTTAAC ACCCGATCTG
CTTCCACAAG CAGCATCTCG AGCAGGGTTA GCGGCAAAAT TATCTCGTAA AGGCTTAAAT
GAGATATCGC CAATATTGCT ACCTTGTATT TTGTTATTAA AAGATAAGAA AGCCTGTATT
CTGCGAGAAT TTGACCTCGA ATCTGACCGT GCAGTCATCC AACTTCCTGA GACTGGCGGG
GAAGAAATAC TCACAATAGA ATCGCTTGAA ACTCTGTATG TGGGCTATCT ATTCCTCGTT
AAGCAAGAAT ATCGTGGCGA CATGGGGTTC GATGTCTATT TACACGACAA TAAAACTCAC
TGGTTAGTCC AAACCTTAAA GGACTCTGCC CCAATTTACC GTGATGCTTT AATTGCCTCG
GTTCTCGTGA ATATTTTCGC GTTAGTCTCG CCGCTGTTTA TCATGAATGT GTACGATAAA
GTTGTACCTA ACCTTGCATT TGACTCCCTG TGGGTGTTAG CGATTGGTGC CTCTATTGCC
TATTTATTTG ACCTTGTTAT GCGGCAATTA AGAAGCTACT TAATTGATGT GGCAGGTAAA
AAAGTAGATA TCATCGTATC ATCTCGCCTC TTTGCCAAAG CAATTGGCAT ACCGCTTGAA
AAACGCTCGC CCAGCATCGG CGGGATGGCT AAACAACTGG GTGAATTTGA TAGCATCCGA
GAAATTTTAA CCTCAGCCAC CATAACGACC TTAGTCGATC TGCCCTTTGC GCTCTTTTTC
CTGATCGTGA TTTATATTGT TGCTGGCGAT TTAGCGGTGA TACCTGTGGT TGGCGGTATG
ATCATCATTG GCTTTACACT CTATACCCAA CCCAAATTAA AAGCGGCGAT TGAGGAAGGT
AATAAGTTTT CCAGCTTAAA ACACGGGCAT TTGATTGAGA GCCTATCTGC ACTTGAGTCG
ATTAAAGCCA ACGGCGCTGA AGGAATTGTT CAAAAAAGCT GGCAACAGAT GATCGGCCAC
AGTGCAAACT GGCAATTAAA ATCCAAAAAA CTCTCAAATT CCGTATCGAA TACTGCCAAT
TTTATCGTGC AATTTACCGT AGTATGCGTG GTTATTTTAG GGGTTTACCG CGTTTCAGAT
AACCTAATTT CCATGGGTGG GATCATTGCT GCGGTAATGT TATCAAGCCG CGCCATTGCA
CCAATGGCAC AGTTAGCTGG ATTAATGACG CGGGCCAACC ATACTGCCAG CGCACTGCGC
CAGCTCAATG AGTTAATGCT GCAAGAAGAC GAGTTTGAAA ATAAAGGCCA CTTAGTCAGT
AAACAGCGTT TAATAGGCAA AATAAACGCC GACCACGTTG GATTTAGTTA TCCAGGCTCT
GAAAAACCCG TGCTTCACCC GCTCTCATTA ACCATCAATC CAGGTGAGCG TATTGCGATT
ATCGGCCGCA ATGGTTCTGG TAAGAGTACC TTAGCCAAAC TTCTCGTCGG ACTCTTCCAA
CCAACAACTG GTAGCCTACG TTACGATGGT GTCGATTCGG CGCAAATTCA TCCTAGCGAT
CTACGCCGTA ATTTTGGTTA TTTGCCGCAG GATGTCACCC TATTTCATGG CACGATCAGA
GATAACATTC TCTTTGGTAC TCGCCAAGTG ACAGAGCATC AGCTTATCCG TGCGGTGCAG
CTTTCAGGTG TCAGTCAATT TACGCACTTG GAAGCTGAAG GCCTAGATCA ACAGGTTGGT
GAAGGTGGAA TGTCTCTTAG CCGCGGACAA CGGCAAACCG TCGCCCTTGC CCGAGCGACC
CTTAATGACC CACCCGTATT GTTGATGGAT GAGCCTACTG CGAGTTTAGA TGCTCGGGCA
GAACAACAGT TTATTCGCTC AATGCAAAAT GTCAGCAAGG ATAGAACTCT GCTGCTAATC
ACTCACAAAA TGCATTTATT ACAATTGGTT GACCGTATTA TTGTGCTTGA AAGGGGCCAT
GTTGTTGCTG ATGGTCCTAA AGCTGAAGTG TTGGAAAAAC TCAATTTTGG CCTTGTTAAC
GGAGGCGCTA AAAATGAGTA A
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| Protein sequence | MPVTASEKVE QWTISASQRV IVDPLLDCLV LLTEHFGNPC SSDSLAAGLP LSGAVLTPDL
LPQAASRAGL AAKLSRKGLN EISPILLPCI LLLKDKKACI LREFDLESDR AVIQLPETGG
EEILTIESLE TLYVGYLFLV KQEYRGDMGF DVYLHDNKTH WLVQTLKDSA PIYRDALIAS
VLVNIFALVS PLFIMNVYDK VVPNLAFDSL WVLAIGASIA YLFDLVMRQL RSYLIDVAGK
KVDIIVSSRL FAKAIGIPLE KRSPSIGGMA KQLGEFDSIR EILTSATITT LVDLPFALFF
LIVIYIVAGD LAVIPVVGGM IIIGFTLYTQ PKLKAAIEEG NKFSSLKHGH LIESLSALES
IKANGAEGIV QKSWQQMIGH SANWQLKSKK LSNSVSNTAN FIVQFTVVCV VILGVYRVSD
NLISMGGIIA AVMLSSRAIA PMAQLAGLMT RANHTASALR QLNELMLQED EFENKGHLVS
KQRLIGKINA DHVGFSYPGS EKPVLHPLSL TINPGERIAI IGRNGSGKST LAKLLVGLFQ
PTTGSLRYDG VDSAQIHPSD LRRNFGYLPQ DVTLFHGTIR DNILFGTRQV TEHQLIRAVQ
LSGVSQFTHL EAEGLDQQVG EGGMSLSRGQ RQTVALARAT LNDPPVLLMD EPTASLDARA
EQQFIRSMQN VSKDRTLLLI THKMHLLQLV DRIIVLERGH VVADGPKAEV LEKLNFGLVN
GGAKNE
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