Gene SO_4221 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_4221 
SymbolmurD 
ID1171825 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand
Start bp4395439 
End bp4396758 
Gene Length1320 bp 
Protein Length439 aa 
Translation table11 
GC content51% 
IMG OID637345948 
ProductUDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 
Protein accessionNP_719749 
Protein GI24375706 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase 
TIGRFAM ID[TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCAAAGTC AGTATTCACA CATAGTATTA GGGTTGGGAG CCACTGGGCT TTCGGTAGTG 
CGCTATTTGT GTGGAAAAGG CATTACGCCG TTGGTGATGG ATAGCCGTCG CCAGCCCCCA
GGCGCCGAGA CGCTGGCAAG CTCATTCCCT GAGGTGAAGT TGATTGCTGG CGGATTTGAT
TGCCGCTACC TAGTGCAGGC GACGCAAATC ATTATCAGCC CTGGGATTGC GATGAATACC
CCCGAAGTGC GCGCTGCACT GGATATGGGC ATTGAAGTGA TTGGAGATGT TGAACTGTTT
GCCCGTGAGA TTGCCGATCG TAAACCTTGT GTGATTGGGA TTACGGGCTC AAATGGCAAA
ACGACAGTGA CCACCTTAGT GGGTGAAATG CTGCGAGAAG CGGGCATTGC TGTTGCCGTG
GGCGGCAATA TTGGTATTCC GGCGCTGGAT TTGCTGAAAG AGAATGCTGA TATTTTTGTG
CTTGAGTTAT CGAGTTTCCA ACTTGAAACC ACCCATAGCT TGAACTGCGT TGCCTCAACC
TGCTTAAACG TGACGGAAGA TCACATGGAC AGATACAGCG ATATGGATGC CTATCGTAAG
GCTAAGCTGC GTCTGTACCA TCAAAGTCGT TCCATCATTT TTAACCGTGA TGATGCGCTG
ACTATTCCAA CTGAACCCAT GAACCAAAAC AGCTTTGGTT TAGCGCCGCC TGAGGGTGAT
GAGTGGGGCA TTTGTGACAG TAAGATTTAT CATGGTCACA GTGAAATCAT GCCGATCACT
GAAGTGTCGC TGATTGGCAG TCATAACCAT GCCAACTTAC TTGCTGCCAT GGCGCTGGTC
TATGCCGTGG GCGTGGATAA ACAAGTGATG GCCAACGTGG CTCGCACCTT TACGGGACTT
TCCCACCGCT GCGAAGTGGT TGGTGTCAAA GGTGGTGTCA CCTATGTGAA CGATTCTAAG
GCGACCAATG TGGGCGCCAC CGTCGCGGCG CTTGATGGAT TAAGTGATCA CCTCGGTGAC
ATTATTTTGA TTGCCGGTGG CGATGGTAAG GGCGCGGATT TCAGCCCGCT TGAAGAGCCA
TTAACAAAAG TGACTCACCT TATTACCTTA GGTCGCGATG GCAATAAAAT TGCCGCGTTG
AAGGAAGGTG CTATCAAGGT TGATTCTATG GCGGCAGCCG TTGCCAAGGC AGCTCAATTA
GCTACCTCGG GTGATATTGT GTTGTTGTCG CCCGCGTGTG CAAGCCTTGA TATGTACAGC
AACTTTATGG CCCGTGGCGA TGATTTTAGA AGCCAAGTGG AGCAACTCGA TGGCGAGTGA
 
Protein sequence
MQSQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GAETLASSFP EVKLIAGGFD 
CRYLVQATQI IISPGIAMNT PEVRAALDMG IEVIGDVELF AREIADRKPC VIGITGSNGK
TTVTTLVGEM LREAGIAVAV GGNIGIPALD LLKENADIFV LELSSFQLET THSLNCVAST
CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD
EWGICDSKIY HGHSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVM ANVARTFTGL
SHRCEVVGVK GGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLEEP
LTKVTHLITL GRDGNKIAAL KEGAIKVDSM AAAVAKAAQL ATSGDIVLLS PACASLDMYS
NFMARGDDFR SQVEQLDGE