Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4221 |
Symbol | murD |
ID | 1171825 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4395439 |
End bp | 4396758 |
Gene Length | 1320 bp |
Protein Length | 439 aa |
Translation table | 11 |
GC content | 51% |
IMG OID | 637345948 |
Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
Protein accession | NP_719749 |
Protein GI | 24375706 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGCAAAGTC AGTATTCACA CATAGTATTA GGGTTGGGAG CCACTGGGCT TTCGGTAGTG CGCTATTTGT GTGGAAAAGG CATTACGCCG TTGGTGATGG ATAGCCGTCG CCAGCCCCCA GGCGCCGAGA CGCTGGCAAG CTCATTCCCT GAGGTGAAGT TGATTGCTGG CGGATTTGAT TGCCGCTACC TAGTGCAGGC GACGCAAATC ATTATCAGCC CTGGGATTGC GATGAATACC CCCGAAGTGC GCGCTGCACT GGATATGGGC ATTGAAGTGA TTGGAGATGT TGAACTGTTT GCCCGTGAGA TTGCCGATCG TAAACCTTGT GTGATTGGGA TTACGGGCTC AAATGGCAAA ACGACAGTGA CCACCTTAGT GGGTGAAATG CTGCGAGAAG CGGGCATTGC TGTTGCCGTG GGCGGCAATA TTGGTATTCC GGCGCTGGAT TTGCTGAAAG AGAATGCTGA TATTTTTGTG CTTGAGTTAT CGAGTTTCCA ACTTGAAACC ACCCATAGCT TGAACTGCGT TGCCTCAACC TGCTTAAACG TGACGGAAGA TCACATGGAC AGATACAGCG ATATGGATGC CTATCGTAAG GCTAAGCTGC GTCTGTACCA TCAAAGTCGT TCCATCATTT TTAACCGTGA TGATGCGCTG ACTATTCCAA CTGAACCCAT GAACCAAAAC AGCTTTGGTT TAGCGCCGCC TGAGGGTGAT GAGTGGGGCA TTTGTGACAG TAAGATTTAT CATGGTCACA GTGAAATCAT GCCGATCACT GAAGTGTCGC TGATTGGCAG TCATAACCAT GCCAACTTAC TTGCTGCCAT GGCGCTGGTC TATGCCGTGG GCGTGGATAA ACAAGTGATG GCCAACGTGG CTCGCACCTT TACGGGACTT TCCCACCGCT GCGAAGTGGT TGGTGTCAAA GGTGGTGTCA CCTATGTGAA CGATTCTAAG GCGACCAATG TGGGCGCCAC CGTCGCGGCG CTTGATGGAT TAAGTGATCA CCTCGGTGAC ATTATTTTGA TTGCCGGTGG CGATGGTAAG GGCGCGGATT TCAGCCCGCT TGAAGAGCCA TTAACAAAAG TGACTCACCT TATTACCTTA GGTCGCGATG GCAATAAAAT TGCCGCGTTG AAGGAAGGTG CTATCAAGGT TGATTCTATG GCGGCAGCCG TTGCCAAGGC AGCTCAATTA GCTACCTCGG GTGATATTGT GTTGTTGTCG CCCGCGTGTG CAAGCCTTGA TATGTACAGC AACTTTATGG CCCGTGGCGA TGATTTTAGA AGCCAAGTGG AGCAACTCGA TGGCGAGTGA
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Protein sequence | MQSQYSHIVL GLGATGLSVV RYLCGKGITP LVMDSRRQPP GAETLASSFP EVKLIAGGFD CRYLVQATQI IISPGIAMNT PEVRAALDMG IEVIGDVELF AREIADRKPC VIGITGSNGK TTVTTLVGEM LREAGIAVAV GGNIGIPALD LLKENADIFV LELSSFQLET THSLNCVAST CLNVTEDHMD RYSDMDAYRK AKLRLYHQSR SIIFNRDDAL TIPTEPMNQN SFGLAPPEGD EWGICDSKIY HGHSEIMPIT EVSLIGSHNH ANLLAAMALV YAVGVDKQVM ANVARTFTGL SHRCEVVGVK GGVTYVNDSK ATNVGATVAA LDGLSDHLGD IILIAGGDGK GADFSPLEEP LTKVTHLITL GRDGNKIAAL KEGAIKVDSM AAAVAKAAQL ATSGDIVLLS PACASLDMYS NFMARGDDFR SQVEQLDGE
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