Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | SO_4094 |
Symbol | cafA |
ID | 1171708 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Shewanella oneidensis MR-1 |
Kingdom | Bacteria |
Replicon accession | NC_004347 |
Strand | - |
Start bp | 4252299 |
End bp | 4253765 |
Gene Length | 1467 bp |
Protein Length | 488 aa |
Translation table | 11 |
GC content | 50% |
IMG OID | 637345828 |
Product | ribonuclease G |
Protein accession | NP_719624 |
Protein GI | 24375581 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG1530] Ribonucleases G and E |
TIGRFAM ID | [TIGR00757] ribonuclease, Rne/Rng family |
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Plasmid Coverage information |
Num covering plasmid clones | n/a |
Plasmid unclonability p-value | n/a |
Plasmid hitchhiking | n/a |
Plasmid clonability | n/a |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGGTTCAG AGTTACTTAT TAACGTAACC CCATCAGAGG CCCGTGTCGC TTTGGTTGAG CACGGCGTGC TGCAAGAAGT CCATATTGAA CGCCGCATGA AGCGTGGCCT TGTGGGCAAT ATTTACAAAG GTAAAATCAG CCGTGTGTTG CCCGGTATGC AAGCCGCCTT CGTGGATATT GGTTTAGATA AAGCGGCCTT TTTACATGCC TCCGACATAG TGCCGCACAC CGAATGTGTC GCCGATGTCG AGAAAGGCCA TTTTGTGGTC CGTGATATCG CAGAGCTGGT GCGCCAAGGG CAAGATATTA TGGTGCAAGT GGTGAAAGAC CCGCTCGGCA CTAAAGGTGC ACGCCTGACC ACGGACATTA CTCTGCCTTC CCGTTATTTG GTGTTTATGC CGGGCTCCAG CCATATAGGG GTGTCCCAGC GGATTGAGCA GGAAGAAGAG CGCAGTCGTC TCAAAAAAAT CACTCTGCCT TTCGTCGATG AAGACGGCGG CTTTATTATC CGCACCGCCG CCGAGGGCGT AGGTGAGGAT GAGCTCGCGC AGGACGCCGC TTTTTTGCGT CGAGTCTGGT CTAAAGTCTC GGAGCGTCGT CAGCGCCGTG GTGTTGCGTT ACTCTATCAA GATCTCGCTT TGCCTGTACG GATTGTGCGT GACTTTGTTG GGACGGAATT AGATCGCATT CAAGTCGATT CGCGGCGCAC TTTTGCCGAG CTGCAAGCCT TCGCTCAAGA GTTTATGCCG GAAATCGCCG ACAAGATTGA GCACTATTCT GGCCCAGCGC CGATTTTCGA TCTCTACGAT GTTGAGAATG AAATCCAACG CGCCCTTGGA CGCAAGGTAG AGCTCAAATC GGGTGGCTAT CTGATTATCG ATCAGACCGA AGCCATGACC ACGGTCGATA TCAACACAGG TGCCTTTGTT GGCCACCGCA ATCTTGAAGA AACCATCTTT AACACTAACC TCGAAGCTAC CCAAGCCATC GCGCGGCAAC TTAGGCTACG TAATCTCGGT GGCATCATCA TTATCGACTT TATCGATATG CTGAGTGACG AGCATAAAAC CCGTGTACTC AATAGCTTAA ACAGTGCGTT AGCCAAGGAC AGGGTTAAAA CCAATGTCAG TGCTTTCTCT GGGTTAGGAT TAGTGGAAAT GACCCGCAAA CGCACCCGAG AGAGTTTAGA GCATGTGCTG TGCGGCGAGT GCCCTGCGTG TAAGGGGACG GGGAGTATGA AAACAGTCGA AACAGTCTCT TATGAAATAT TCCGTGAAAT TATCCGTTTG AATAGAGCCT ATGATGCTGA TGAGTTTTTG CTGTACTGCT CGCCTGCTGT GTATAACAGC TTAAGTGGCG ATGAAAGTCA TCTAGTCGCT GAGCTTGAGG TCTATATCGG TAAACGTATT CGTCTGCAAA ATGAGCCTAT GTATTCCCAG CATAAATACG ACGTGGTGAT GATGTAG
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Protein sequence | MGSELLINVT PSEARVALVE HGVLQEVHIE RRMKRGLVGN IYKGKISRVL PGMQAAFVDI GLDKAAFLHA SDIVPHTECV ADVEKGHFVV RDIAELVRQG QDIMVQVVKD PLGTKGARLT TDITLPSRYL VFMPGSSHIG VSQRIEQEEE RSRLKKITLP FVDEDGGFII RTAAEGVGED ELAQDAAFLR RVWSKVSERR QRRGVALLYQ DLALPVRIVR DFVGTELDRI QVDSRRTFAE LQAFAQEFMP EIADKIEHYS GPAPIFDLYD VENEIQRALG RKVELKSGGY LIIDQTEAMT TVDINTGAFV GHRNLEETIF NTNLEATQAI ARQLRLRNLG GIIIIDFIDM LSDEHKTRVL NSLNSALAKD RVKTNVSAFS GLGLVEMTRK RTRESLEHVL CGECPACKGT GSMKTVETVS YEIFREIIRL NRAYDADEFL LYCSPAVYNS LSGDESHLVA ELEVYIGKRI RLQNEPMYSQ HKYDVVMM
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