Gene SO_4053 details

Gene Information

• Locus tag: SO_4053
• ID: 1171677
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 4205753
• End bp: 4207657
• Gene Length: 1905 bp
• Protein Length: 634 aa
• Translation table: 11
• GC content: 50%
• IMG OID: 637345797
• Product: methyl-accepting chemotaxis protein
• Protein accession: NP_719583
• Protein GI: 24375540
• COG category: [N] Cell motility; [T] Signal transduction mechanisms
• COG ID: [COG0840] Methyl-accepting chemotaxis protein

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

GTGAAGAATT TAAACATTAG CACTCGGATA GTGTTAGGCA TCAGCCTACT GCTATTTGCG 
GTGATGAGCT TTATCATGCC GCTGGTGCTA TCGGAATTCA GTCGCCAAAT AAGGGAGTCT 
GAACAACGGG AATTACATAA GCTATACGAA ACCGCCGTAG CGAATATCGT CTCATCGGGA 
CAAAGAGCAC AGGCGATGGC AACTTTAATC TCACTCACAC CTGAGATCCA AAGCAATTTT 
GCCGAGCGCG ACCGTGAAGC CCTCTTACAA CGCACTCAAC CACTATTTAT GCGCCTTAAA 
CAAGATTTTG CGGTGCAGCA ATTTCAGTTT CACACCCCGC CCGCCACCTC ATTTTTGCGC 
TTACATCGCC CTGAAAAATT TGGCGATGAC CTCACCGCGA TCCGTAAAAC CATTGTCGAA 
ACCAACACCC AAAAACAACC ACTCAGCGGC TTAGAATACG GGGTTGAAGG CTTAGGCATC 
CGCGGTCTCG TGCCGATGAA TTACCAAGGG CAACATACGG GTTCGGTCGA GTTTGGCATG 
TCATTTGGCC AGCCCTTCTT CGACAACTTT AAAAATGCTT ACCAAGCAGA AATAACCCTT 
TTGCTGCCTA AGGACGGTAA CTTTGTCCCC TTTGGTGGCA CCTTTACCAC CGACACCAGC 
GCCTCAAGCG AACTCAACAA GGTGATGCAA GGTACTGAAG TGATTCGCAC CATCGATTTA 
GACGGCAAGA GCTACGCCCT ATATCGCCAT GGGATGCAAG ACTACTCGGG CAAAACCTTT 
GGTGTGCTGG ATATTGCACT GGACAGAAGC CACTCTGAAC AAGCTATGTC CGATATTCGC 
TTTAAACTCA TCATGATAGG CTTTATTGCC TTCTTAATTG GCACCGCCAT TGCTTGGTTT 
ATCGCCAAGA GCATTACCCG CCCGATTGCC GAAACAACCA ATGCGCTCAA TGACATTGCC 
GAAGGTGAAG GCGATTTAAC GCGCCGGATT GAAGTGAAGA GTAAAGACGA AATCGCGCAG 
CTTGCACTCG CCTTTAACCG TTTTGCAGAA AAGATCCACG CGACTGTTGC TCAAGTCTCT 
GACTCCACCA GCTTACTGGC GACATCGGCC GAAGAAATGT CCGCCATTAC GAATGAAACT 
CAGCAAATGG CGAAACGGCA ACACCTTGAG ACCGAACAAG TCGCCACCGC GATGAATGAA 
ATGGCGGCAA CAGTACAAGA AGTTGCCCAC AATGCGACTG ATGCCGCTGA CGCTGCAACC 
CACGCCAGCG AGTCAACTGA ACATGGTAAG TTGCTGGTTG AAAAGGTCAT TTCGACCATT 
AGTCTGCTGG CGGATGAAAT AGCCCATGCA GCTAAAGCCA TCAACGAACT TGAACGCAAT 
ACCGCGCAGA TTGACTCGGT ATTAGTCGTT ATCCGTAATA TTGCCGATCA AACCAATTTG 
CTCGCCCTCA ATGCCGCCAT TGAAGCTGCC CGTGCGGGTG AACAAGGCCG CGGTTTTGCG 
GTGGTGGCAG ATGAAGTACG TACGCTCGCC AGCCGCACTC AAGCTTCAAC CAGCGAAATT 
CAGCAAATGA TTGAAGCCTT GCAACATAGC GCCAAATCGA CCGTCAGCAC CATGAATACC 
AGTACCGCCA CCACGCAAAA CTGTGTTTCG CTGGTACACG AGGCGGGTGA AGCGCTCGAA 
GCCATTACCC AAGCAGTGTC CACCATTAGC CAAATGAACA TTCAAATCGC TAGCGCCGCC 
AACGAGCAAT GTGCTGTGTC GGCGGAAATC AATAAAAACG TCAATAATAT TAATGATATT 
ACGATCAATG CCACCGAGAG TGCCGTGCAA ACGGCGCGGG CGGGAGACGA GTTAGCACAG 
CTGTCGATGC GCTTAACCAC ACTCCTCGCT CAGTTTAGGA TTTAA 

 

Protein sequence

MKNLNISTRI VLGISLLLFA VMSFIMPLVL SEFSRQIRES EQRELHKLYE TAVANIVSSG 
QRAQAMATLI SLTPEIQSNF AERDREALLQ RTQPLFMRLK QDFAVQQFQF HTPPATSFLR 
LHRPEKFGDD LTAIRKTIVE TNTQKQPLSG LEYGVEGLGI RGLVPMNYQG QHTGSVEFGM 
SFGQPFFDNF KNAYQAEITL LLPKDGNFVP FGGTFTTDTS ASSELNKVMQ GTEVIRTIDL 
DGKSYALYRH GMQDYSGKTF GVLDIALDRS HSEQAMSDIR FKLIMIGFIA FLIGTAIAWF 
IAKSITRPIA ETTNALNDIA EGEGDLTRRI EVKSKDEIAQ LALAFNRFAE KIHATVAQVS 
DSTSLLATSA EEMSAITNET QQMAKRQHLE TEQVATAMNE MAATVQEVAH NATDAADAAT 
HASESTEHGK LLVEKVISTI SLLADEIAHA AKAINELERN TAQIDSVLVV IRNIADQTNL 
LALNAAIEAA RAGEQGRGFA VVADEVRTLA SRTQASTSEI QQMIEALQHS AKSTVSTMNT 
STATTQNCVS LVHEAGEALE AITQAVSTIS QMNIQIASAA NEQCAVSAEI NKNVNNINDI 
TINATESAVQ TARAGDELAQ LSMRLTTLLA QFRI