| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_4034 |
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| Symbol | deaD |
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| ID | 1171660 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4189577 |
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| End bp | 4191448 |
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| Gene Length | 1872 bp |
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| Protein Length | 623 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 637345780 |
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| Product | ATP-dependent RNA helicase DeaD |
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| Protein accession | NP_719564 |
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| Protein GI | 24375521 |
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| COG category | [J] Translation, ribosomal structure and biogenesis
[K] Transcription
[L] Replication, recombination and repair |
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| COG ID | [COG0513] Superfamily II DNA and RNA helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCATCCG ATGAAAGAAC TTTCCGTGAA CTCGGCCTAT CCGAGAATTT GTTGCGTGCT
CTTGACGAGC TAGGTTACGA AAAACCAACG CCAATCCAAT CAGCCAGTAT TGATCCACTT
ATGGCTGGCA AAGATATTTT AGGTCAAGCG CAAACAGGTA CAGGTAAAAC TGGCGCCTTC
GCGCTGCCGC TACTAAACAA AGTCACCAGC CAAACAACAC CGCAAATTTT AGTACTCGCA
CCAACGCGTG AACTAGCGGT TCAGGTTGCT GAAGCATTCA GTAGCTATGC CAAATTTATG
AAGAATTTCC ATGTACTGCC AATTTACGGC GGTCAAAGCA TGCAACAACA GTTGAATGCC
CTTAAGCGTG GCCCGCAAGT GATCGTGGGT ACACCGGGTC GTGTTATGGA CCATATGCGC
CGTGGCACTC TGAAACTGGA AACCTTGCAA GCCCTCGTTC TCGATGAAGC CGACGAAATG
TTAAAAATGG GCTTTATCGA TGATATCGAA TGGATTCTGG AACACACTCC ACCACAACGC
CAACTTGCCT TGTTCTCGGC AACCATGCCA GAGCAAATTA AGCGGGTTGC TAACAAGCAT
TTAAAAAATG CGACTAATAT CAGCATCGCT GCAAGTCACA CCACAGTTGA CTCAATCGAG
CAACGTTTTG TGCAGGTGTC ACAGCACAAT AAATTAGAAG CCTTAGTACG CGTATTAGAA
GTTGAAAATA CTGAAGGTAT TATCATCTTC GTTCGTACCC GTAACTCATG CGTTGAATTA
GCTGAAAAAC TTGAAGCCCG TGGCTATGCC TCATCACCAC TACACGGTGA TATGAACCAG
CAAGCCCGTG AGCGCGCGGT TGAGCAGCTT AAAAACGGCA AGCTAGACAT TCTGATCGCA
ACTGACGTTG CGGCCCGAGG TCTGGACGTT GAGCGTATCG GCCACGTAGT TAACTACGAT
ATCCCTTACG ATACTGAAGC TTACGTACAC CGTATTGGTC GTACTGGCCG TGCGGGTCGT
ACCGGTATGG CGATTCTGTT CGTCACCAGC CGTGAAATGC GTATGCTGCG CACCATCGAG
CGCGCAACCA ACAGCCGTAT TTCGCCAATG AAAGTGCCAA GCCCAGAGAC GGTTGCAGAA
CGTCGTCTGT CTCGCTTAGG TGAGCAGCTC GCTCAAACCA TGAATAACGA TCTCGAATTT
ATGCGTGAAG CGGTTGCCCA GTTATGCCAG CAACTTGAAG TAGATACGGA TCTGCTCGCG
GCTGCCCTGC TGCACCAAGT TCAGCAGGAA CGTCCATTGC AATTACCTGC GATTCAAGAG
CGTGTTCGCG ATGAACGCAG TGAGCGCAGC GAACGTGGTT CAGACCGTGG CGCTGAGCGT
GGTGAACGCC GTAGCCGTGA ATCACGTCCA ATGCCAGCAA GCTTAGGCAG CGCTGAAGCG
TTAAAAGACA ATCCAGACCT GAAAATGTGC CGTTATGTGA TCGACGTAGG TCGTGAAAAT
GGCGTAGGTG TAGGCAATAT CGTTGGCGCC ATCGCAAACG AAGCCAATAT CGACAGCCGT
TATATCGGTG CAATCCAACT TTATGATTCA GTGACAACTG TTGACCTGCC AGACGGCATG
CCAAAAGATG TACTACAACA CCTCAAGAAA GTGCGTGTGT GTGGTAAGCC ATTGAATATC
CGTGAAGCTG GCGACCAAGT CTTTGTTGAC TCTGGCCGTG GCGCCCGTAG CGACCGTCGT
CCACGTAGCG ACCGCCCAGC GGGTGATCGC AAGCCACGTG CAGCGTCTGG TGACAAACCG
TTTGCAGACC GCAAACCACG TTCAGACAAG CCAGCAGGCG AGCGTAGACC ACGTAAACCA
CGCGAAGAGT AA
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| Protein sequence | MSSDERTFRE LGLSENLLRA LDELGYEKPT PIQSASIDPL MAGKDILGQA QTGTGKTGAF
ALPLLNKVTS QTTPQILVLA PTRELAVQVA EAFSSYAKFM KNFHVLPIYG GQSMQQQLNA
LKRGPQVIVG TPGRVMDHMR RGTLKLETLQ ALVLDEADEM LKMGFIDDIE WILEHTPPQR
QLALFSATMP EQIKRVANKH LKNATNISIA ASHTTVDSIE QRFVQVSQHN KLEALVRVLE
VENTEGIIIF VRTRNSCVEL AEKLEARGYA SSPLHGDMNQ QARERAVEQL KNGKLDILIA
TDVAARGLDV ERIGHVVNYD IPYDTEAYVH RIGRTGRAGR TGMAILFVTS REMRMLRTIE
RATNSRISPM KVPSPETVAE RRLSRLGEQL AQTMNNDLEF MREAVAQLCQ QLEVDTDLLA
AALLHQVQQE RPLQLPAIQE RVRDERSERS ERGSDRGAER GERRSRESRP MPASLGSAEA
LKDNPDLKMC RYVIDVGREN GVGVGNIVGA IANEANIDSR YIGAIQLYDS VTTVDLPDGM
PKDVLQHLKK VRVCGKPLNI REAGDQVFVD SGRGARSDRR PRSDRPAGDR KPRAASGDKP
FADRKPRSDK PAGERRPRKP REE
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