Gene SO_3960 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3960 
Symbol 
ID1171596 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4101265 
End bp4101996 
Gene Length732 bp 
Protein Length243 aa 
Translation table11 
GC content46% 
IMG OID637345716 
ProductABC transporter, ATP-binding protein 
Protein accessionNP_719490 
Protein GI24375447 
COG category[R] General function prediction only 
COG ID[COG1137] ABC-type (unclassified) transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCAAA TCACCTTAAA AGCACAGAAT CTGGCCAAGA GTTATAAAAG CCGTCAGGTT 
GTTAAAGATG TCAGCCTCAC GGTTAAAACG GGTCAAGTTG TTGGCCTGCT TGGCCCAAAC 
GGCGCAGGTA AAACTACCAC CTTTTACATG GTAGTGGGCT TAGTAAAAAG CGATAAAGGT 
CATATCTTTA TCGACGATGA TGATTTAACT GCCGACCCTA TGCATCTGCG TGCTCGCAAA 
GGTATTGGTT ACCTGCCACA GGAAGCCAGT ATCTTTCGCA AATTAACCGT GCACGACAAT 
ATCATGGCGG TACTGCAAAC CCGTAAAGAA CTCAATAGCG ACCAGCGCGA AGAAGCACTA 
GAGCAGCTAT TAGAAGAGTT CCATATCACC CATATTCGTG ACAGCCAAGG CATGTCCTTA 
TCGGGCGGCG AACGTCGTCG TGTCGAAATT GCCCGCGCAT TAGCGGCTAA CCCAAAGTTT 
ATTTTGCTCG ATGAACCCTT TGCGGGCGTT GATCCAATCT CGGTTATCGA TATCAAGAAA 
ATTATCGAGC AACTCAAAAG TCGAGGTCTT GGAGTATTGA TTACTGACCA CAATGTGCGC 
GAGACCTTAG ATGTCTGTGA ACATGCTTAC ATTGTCAGTC ACGGCAGTCT TATCGCCGAA 
GGAACTCCTG CAGAGATCTT AGACAATCAG CAAGTTAGGG CTGTGTACTT AGGTGAACAA 
TTCAGGCTAT AG
 
Protein sequence
MTQITLKAQN LAKSYKSRQV VKDVSLTVKT GQVVGLLGPN GAGKTTTFYM VVGLVKSDKG 
HIFIDDDDLT ADPMHLRARK GIGYLPQEAS IFRKLTVHDN IMAVLQTRKE LNSDQREEAL 
EQLLEEFHIT HIRDSQGMSL SGGERRRVEI ARALAANPKF ILLDEPFAGV DPISVIDIKK 
IIEQLKSRGL GVLITDHNVR ETLDVCEHAY IVSHGSLIAE GTPAEILDNQ QVRAVYLGEQ 
FRL