Gene SO_3957 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagSO_3957 
Symbol 
ID1171593 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameShewanella oneidensis MR-1 
KingdomBacteria 
Replicon accessionNC_004347 
Strand+ 
Start bp4099622 
End bp4100173 
Gene Length552 bp 
Protein Length183 aa 
Translation table11 
GC content49% 
IMG OID637345713 
Product3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 
Protein accessionNP_719487 
Protein GI24375444 
COG category[R] General function prediction only 
COG ID[COG1778] Low specificity phosphatase (HAD superfamily) 
TIGRFAM ID[TIGR01662] HAD-superfamily hydrolase, subfamily IIIA
[TIGR01670] 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family 


Plasmid Coverage information

Num covering plasmid clonesn/a 
Plasmid unclonability p-valuen/a 
Plasmid hitchhikingn/a 
Plasmid clonabilityn/a 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCCACAGC AAGGATTTTA CGGCCCCGTC AGCGACGATG TGTGGCAACG TGCCCAAAAA 
ATTAAACTGC TGATCTGCGA TGTGGATGGA GTATTCTCTG ACGGCCGCAT TTATTTGAGC 
AACTCGGGTG AAGAATTAAA AGCCTTCCAC ACCCGCGATG GTTATGGTGT ACGTTCACTA 
TTGACCAGCG GTTTTCATCT TGCCGTGATT ACTGGCCGCC AATCAAGAAT TGTTGAAAAC 
CGCATGACTG CCCTTGGGGT CACCCATATT TATCAGGGCG TGGATAATAA ATTTGTTCCC 
TATGAAGAAC TGCTATCGAT CTACAATGTC ACCGCGGAAG AAGTCGCCTA TATCGGTGAC 
GATATTGTTG ATCTGCCGGT GATGAATGTG GTCGGCCTAG CCGTCTGCGT CGCCGATGGT 
CATCCCTATG TACGCCAACA TGCCCATTTT GTAACTCAGT TAAATGGCGG CCATGGCGCG 
CTCAGGGAGC TGACGGATCT GCTATTACTG AGTCAAAACA AATTCACCTC AGCCCATGGG 
ATGAGCATAT GA
 
Protein sequence
MPQQGFYGPV SDDVWQRAQK IKLLICDVDG VFSDGRIYLS NSGEELKAFH TRDGYGVRSL 
LTSGFHLAVI TGRQSRIVEN RMTALGVTHI YQGVDNKFVP YEELLSIYNV TAEEVAYIGD 
DIVDLPVMNV VGLAVCVADG HPYVRQHAHF VTQLNGGHGA LRELTDLLLL SQNKFTSAHG 
MSI