| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | SO_3904 |
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| Symbol | tolC |
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| ID | 1171544 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Shewanella oneidensis MR-1 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_004347 |
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| Strand | + |
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| Start bp | 4051556 |
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| End bp | 4052863 |
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| Gene Length | 1308 bp |
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| Protein Length | 435 aa |
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| Translation table | 11 |
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| GC content | 45% |
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| IMG OID | 637345665 |
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| Product | outer membrane channel protein |
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| Protein accession | NP_719435 |
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| Protein GI | 24375392 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | n/a |
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| Plasmid unclonability p-value | n/a |
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| Plasmid hitchhiking | n/a |
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| Plasmid clonability | n/a |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAATTTA AGATCCGTTC TCTATGCGTA GCATTAACTC TAGCCGCTTC CGCTCATGCG
GTTCAAGCAG ATGATTTACT GCAAATTTAT CAACAAGCAC TGACGAATGA CCCTCTGGTG
TTGCAAGCGC AAGCGCAACG TAACGCTTTG TTTGAGAAAA TTGAACAAAA CCGTGCCCCA
CTGTTACCGA CTATCAGTGC AAACGTGGGT TATGACAAGG CATGGAATGA CCCTCGGGAC
GATAGTAGCG GACTGACTGG TAGCCTAAAG CTAAATCAAG TCATCTATGA TCATAGTGCT
TGGGTAGGTT TAAGCCTTGC CGAGAAAGCG GCTTCTCAAG CTGATTCTAC CTATGCATCG
GCACTGCAAA ATTTGATCTC CCGAGTGACC AAAGCATACT TTGATGTATT AACAGCCAAA
GATAACTACG AGTTCCAAGG TGCGGAAAAG CGCGCGATTG AACGTCAACT CGAGCAAACT
AAACAACGTT TTGCCGTTGG TTTAACTGCC ATCACTGACG TTCATGAAGC ACAAGCACAA
TATGACTTGG CCTCCGCCTC TGAAATTCTT GCTGAAAATA CCCTCGCAAA TAGCTATGAA
GCACTGCGCG AAATCACAGG TATCGATCAC AAAGCCTTAA ACGTGCTCGA CACAAACCGC
TTCTCAGCAG TGACACCCGC ACCGAGTTCA TCAACTGATT GGTTAAAAAT TGCTGAAACC
AATAGTGTCG ATCTGATGAC TCAACGCATT GGTAAAGATA TCGCTCAAGA GACCATTAGC
CTTTATAAAG CAGGCCATAT GCCATCACTG AGCTTAAATG CAGGTTATGC TAAAGGTTTA
GAGCAAAAAT TAGGTGATGC AAGTGAACCT GATTTTGACA ACATGAGCGT TGGCATCAAC
TTAAGCGTGC CGATTTTTGA AGGCTTTAAA GTGTCTTCTC AAGTCAAAGA AGCGCAGTTC
CAATATGTTC AAGCAAGCGA GAGGCTGGAG CAAACCTACC GTGGCGTAGT GAAAAACGTT
CGTAATAACT ACAACAACGT GGGTGCGTCA ATCAGCTCTA TCCGTGCTTA CGAGCAGTCA
GTGATTTCAT CCGAAAGTGC CTTAAAAGCG ACACAAGCAG GCTTTGAAGT TGGAACCCGT
ACCATCGTTG ACGTATTGAA CCGTACACGC GACTTGTACG ACTCAAAGCG TAAATTATCA
GATGCGCGTT ATAGCTATAT CAACTCGATT GTTGCACTGA AACAAGCTGC TGGAACGTTA
AACGAAGATG ATGTTATCGC CATCAACAAC GGCCTAAAAG CTGAATAA
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| Protein sequence | MKFKIRSLCV ALTLAASAHA VQADDLLQIY QQALTNDPLV LQAQAQRNAL FEKIEQNRAP
LLPTISANVG YDKAWNDPRD DSSGLTGSLK LNQVIYDHSA WVGLSLAEKA ASQADSTYAS
ALQNLISRVT KAYFDVLTAK DNYEFQGAEK RAIERQLEQT KQRFAVGLTA ITDVHEAQAQ
YDLASASEIL AENTLANSYE ALREITGIDH KALNVLDTNR FSAVTPAPSS STDWLKIAET
NSVDLMTQRI GKDIAQETIS LYKAGHMPSL SLNAGYAKGL EQKLGDASEP DFDNMSVGIN
LSVPIFEGFK VSSQVKEAQF QYVQASERLE QTYRGVVKNV RNNYNNVGAS ISSIRAYEQS
VISSESALKA TQAGFEVGTR TIVDVLNRTR DLYDSKRKLS DARYSYINSI VALKQAAGTL
NEDDVIAINN GLKAE
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