Gene SO_3835 details

Gene Information

• Locus tag: SO_3835
• Symbol: lolB
• ID: 1171480
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Shewanella oneidensis MR-1
• Kingdom: Bacteria
• Replicon accession: NC_004347
• Strand: +
• Start bp: 3985011
• End bp: 3985655
• Gene Length: 645 bp
• Protein Length: 214 aa
• Translation table: 11
• GC content: 49%
• IMG OID: 637345602
• Product: outer membrane lipoprotein LolB
• Protein accession: NP_719368
• Protein GI: 24375325
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3017] Outer membrane lipoprotein involved in outer membrane biogenesis
• TIGRFAM ID: [TIGR00548] outer membrane lipoprotein LolB

Plasmid Coverage information

• Num covering plasmid clones: n/a
• Plasmid unclonability p-value: n/a
• Plasmid hitchhiking: n/a
• Plasmid clonability: n/a

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAATAATT TGAAGCGCTT CACAAAATCC ATTTTCTCTT GTATCGCCTT GAGCGGCCTA 
TTGTTTTTAG GCGGCTGTGA AACACTGCCG CCAATGACAG ATCTCAGCCC TATCACGGTC 
GATAATGCAG CCCAAGCCAA GGCGTGGGAG TTACAGGGCA AGCTTGCCAT CCGTACTCCT 
GAAGATAAGC TAAGTGCCAA TCTCTATTGG CGCCACAGTG AGGAGCGGGA CGAACTCACC 
CTCACAACGA TGTTAGGTAC CACAGTATTA ACCTTGGAAG CGACACCTAA CTCGGCTCAT 
CTACATATCG ATGGCAAAGA TTTTCGCGAT ACTAACGCTC AAGCCTTGCT TGAGCGCGTC 
AGTGGCTGGT CCATCCCGAT TAACGATTTA CCCCTGTGGA TCACAGGGCA AATCGGCAGT 
TTAGATCGCG TCATCGCCGT TGATAGCGCA GGTCAGGCGA AGCAACTGCA AAATATGCAA 
ACGCCACCGC CTTGGTTGGT CACATTTTTA AGCTGGCAAT CCCAAAGTGG CGCCAAGGTG 
CCTTATCAAT TAACGCTCGA ACGCGGTGAT TTACAGCTCA AGCTGCAACT TAATCAATGG 
CAAGCCTTAG GTAAACCCTC AATACTGCTC GGAGAAAAAC CTTAG 

 

Protein sequence

MNNLKRFTKS IFSCIALSGL LFLGGCETLP PMTDLSPITV DNAAQAKAWE LQGKLAIRTP 
EDKLSANLYW RHSEERDELT LTTMLGTTVL TLEATPNSAH LHIDGKDFRD TNAQALLERV 
SGWSIPINDL PLWITGQIGS LDRVIAVDSA GQAKQLQNMQ TPPPWLVTFL SWQSQSGAKV 
PYQLTLERGD LQLKLQLNQW QALGKPSILL GEKP